Paenibacillus polymyxa SQR-21: PPSQR21_028010
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Entry
PPSQR21_028010 CDS
T03178
Name
(GenBank) efflux transporter rnd family, mfp subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq01501
beta-Lactam resistance
ppq01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
PPSQR21_028010
01503 Cationic antimicrobial peptide (CAMP) resistance
PPSQR21_028010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ppq03036
]
PPSQR21_028010
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ppq02000
]
PPSQR21_028010
01504 Antimicrobial resistance genes [BR:
ppq01504
]
PPSQR21_028010
Chromosome and associated proteins [BR:
ppq03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
PPSQR21_028010
Transporters [BR:
ppq02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
PPSQR21_028010
Antimicrobial resistance genes [BR:
ppq01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
PPSQR21_028010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YknX_C
BSH_RND
Beta-barrel_RND_2
RND-MFP_C
CzcB_C
PUMA_CC
BSH_CusB
OEP
HH_EMRA
BSH_CzcB
Beta-barrel_AprE
HH_CzcB
BSH_YknX
CSD2
Beta-barrel_ALG44
GAS
DUF745
NtA
OB_RNB
Beta-barrel_RND_rel
HH_YBHG
SH3BP5
Motif
Other DBs
NCBI-ProteinID:
AHM66443
LinkDB
All DBs
Position
complement(3224844..3226310)
Genome browser
AA seq
488 aa
AA seq
DB search
MKILRVESTLAALVLGGAVLAGCSSNSGAAQDMVVPVKISQAQQGIIGQGNIYTGTVTPS
ETVNIVPKVGGKVVELPVDIGSEVKKGQVLFKLDDKDMRNNVAKARAAAAAAAAGVSTAQ
ASHESTMVQATSGLVQSKSGVIQSQSAINQAQGAINQATTAVEQATHGVSSAANTVKQTQ
QALADAQKNVTRTQSLFDAGASTQAQLEQAKTAVVNAEAAYNNAQNAQANAKDQLIAAQK
ALTTARNSYDTAKNSYSNANSGYSNAQNQLKVSQNTAGIESSQQSLKQAQLNVNIAQDAL
DDTVVTSPINGIVGTKNAEVGEMVSAQSPALVIANLSTVNTLIYVPAEQINNVKAGDKVQ
VRVAASNIVTTGTVKNVSPLDASGKGYPVKISVANPDMKLKSGMLADISFVAANAQEGIV
VPTAAVQKDQGKEYVYVVSGDHAKRKEVKTVQTTGSQTLITSGLSKEENVIVNNLALLSD
NSPITITQ
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattgagagtagaaagtacattagcggctttagtcctcggcggcgcagtgctg
gcaggctgctccagtaatagtggagcggctcaggacatggtcgttccagttaaaattagt
caagcacagcaggggattatcggacagggaaatatttatacaggtacggtaacaccttcg
gaaaccgtcaatattgtgcctaaagtaggcggtaaagtggttgagctgcctgtggatatt
ggttctgaggttaaaaagggccaagtcctcttcaagcttgatgataaggatatgcgtaac
aatgttgcaaaagctcgcgccgcagcagcagccgcagcagctggcgtaagtactgctcaa
gcatcccatgaatcaacgatggttcaagcaacttcgggcttagtgcagtccaagagcggt
gtgattcaatcccaaagcgcaatcaatcaggctcagggggctattaatcaagcaactaca
gccgtagaacaagcgacacatggtgtttcctcggcagccaatacggtgaaacaaacacag
caagctttggcagacgcacaaaagaatgtaacacgtacacaaagtctgtttgatgctggt
gcgagcacccaagcacaattagaacaagcaaaaaccgcagttgtgaatgcggaagcggct
tataataatgcacaaaatgcgcaggctaatgcaaaagaccaattgatagctgctcaaaag
gctctaactacagcccgtaacagctatgatacagcaaaaaatagctacagtaatgctaac
agcggctacagcaatgcgcagaatcagcttaaagtatctcaaaatacggctggcatcgag
tctagccaacaatctcttaagcaggcacaactgaatgtaaacattgctcaggatgcattg
gatgacaccgttgttacatcaccgatcaatggtattgtgggtacgaaaaatgcagaagtg
ggcgaaatggtatccgctcagtctcctgcgctagtcattgctaacctgagtacggtcaat
acattaatttatgtccctgcggaacagatcaacaatgtaaaagcaggtgacaaggtacag
gttcgtgttgcagcctccaacattgtaacaacaggtacagtaaaaaatgtaagcccgttg
gatgcaagcggaaaaggttatcctgtaaaaatctcagtagccaatccagacatgaaactg
aaatccggcatgttggctgatatcagctttgtcgctgccaatgcgcaagaaggcattgtt
gttcctactgcggcagttcaaaaggatcaaggtaaagaatatgtatatgtagtaagcggc
gaccatgcgaaacgcaaggaagtgaaaactgttcaaacgacaggctcacaaacactcatt
accagtggcttgagcaaggaagagaatgtgattgtgaataatctggcattgctgtccgat
aactcaccgattacaattacccaataa
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