Paenibacillus polymyxa SQR-21: PPSQR21_028250
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Entry
PPSQR21_028250 CDS
T03178
Symbol
nth
Name
(GenBank) endonuclease iii
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
ppq
Paenibacillus polymyxa SQR-21
Pathway
ppq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPSQR21_028250 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppq03400
]
PPSQR21_028250 (nth)
Enzymes [BR:
ppq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PPSQR21_028250 (nth)
DNA repair and recombination proteins [BR:
ppq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PPSQR21_028250 (nth)
Prokaryotic type
PPSQR21_028250 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Caskin-tail
Motif
Other DBs
NCBI-ProteinID:
AHM66467
LinkDB
All DBs
Position
complement(3255502..3256176)
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AA seq
224 aa
AA seq
DB search
MNAATARHILDTIGTMFPDAHCELNHDNAFELTIAVLLSAQCSDQMVNKVTADLFQKYKS
PEDYLAVPLEELEQDIRRIGLYRNKAKHIHNLCRILIDQYGGEIPSEHDQLVKLPGVGRK
TANVVVSTAFDVPAIAVDTHVERVSKRLGFAGWDDSVLEVEKKLMKRVPRDEWSVTHHRL
IFFGRYHCKAQNPQCQVCPLLDVCREGKKRMKTSLIRKDKKRRA
NT seq
675 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgcagcaaccgcacgtcatatattggacaccatcggtacgatgtttccggatgcc
cattgtgagctgaaccatgacaatgcttttgaattaacgattgccgtgttattgtctgct
caatgctccgatcagatggtcaataaagtaacggcagacctgtttcaaaaatacaagtca
cctgaggattatttggcagttcctcttgaggaactggagcaggatattcgtagaatcggc
ttgtaccgaaacaaggccaagcatattcataacctctgccggattttaatagaccagtac
gggggagagataccttcggagcatgatcagctggtcaagctacctggtgttggccgcaag
acggctaatgtcgtagtatctactgcctttgatgtaccagctattgcggtagatacgcat
gtagagcgcgtttccaaacggctcggctttgcagggtgggatgattcagtgcttgaggtg
gaaaaaaagctgatgaaaagggtacctagggatgaatggtctgtgacccatcaccgactc
atttttttcggacgctaccattgcaaagctcaaaaccctcaatgtcaggtatgtccattg
cttgatgtgtgcagggaaggcaagaaacgtatgaaaacgtctcttatcagaaaagataag
aaacgtagagcttaa
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