Pseudomonas protegens CHA0: PFLCHA0_c19340
Help
Entry
PFLCHA0_c19340 CDS
T02671
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03030
DNA replication
pprc03410
Base excision repair
pprc03420
Nucleotide excision repair
pprc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFLCHA0_c19340 (ligA)
03410 Base excision repair
PFLCHA0_c19340 (ligA)
03420 Nucleotide excision repair
PFLCHA0_c19340 (ligA)
03430 Mismatch repair
PFLCHA0_c19340 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprc03032
]
PFLCHA0_c19340 (ligA)
03400 DNA repair and recombination proteins [BR:
pprc03400
]
PFLCHA0_c19340 (ligA)
Enzymes [BR:
pprc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PFLCHA0_c19340 (ligA)
DNA replication proteins [BR:
pprc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFLCHA0_c19340 (ligA)
DNA repair and recombination proteins [BR:
pprc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PFLCHA0_c19340 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFLCHA0_c19340 (ligA)
MMR (mismatch excision repair)
DNA ligase
PFLCHA0_c19340 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PFLCHA0_c19340 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
5_3_exonuc
Nlig-Ia
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AGL83716
UniProt:
A0A2C9EJ83
LinkDB
All DBs
Position
2135584..2137950
Genome browser
AA seq
788 aa
AA seq
DB search
MTAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFRELKALEAEHPELVTSDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFEEVDMREFDRRVNEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRG
EVFMSKAGFERLNAAQLEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSA
DIADTHIGNLERLKQWGMPISRELRLAKGIDECLDYYREIGERRNALPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLQPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPENARPVQIPESCPVCGS
HVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKTIEQ
LVDENLIASPADLYRLKYEQIIDLEGFAEVSSNKLLKAIEDSKRPALARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDSHNQEVIGSLLAADQ
CGLVLQDQGELGAEFAASTTLGGMLDKLNIPSVGPGAAQKLADKFGSLQGVIEADWLDMR
QALPEKQAKAVREFFDNPANAQLAQAIEQQLQAFGMHWQSEKKVVAGLSLAGQTWVLTGS
LELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVAF
LTEHGVPT
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccgaaacccgcattcttgagctgcgcgctgagctggaccagcacaactac
cgctaccacgtactggatgaacccagcatcccggatgcggaatacgaccggctgttccgt
gagctcaaggccctggaagccgagcaccctgaactggtgaccagcgattcgccaacccag
cgtgtcggcagcgcagcgctttcggccttcacccaggtgcgtcatgaaatccccatgctc
agcctcggcaacgctttcgaggaagtcgacatgcgcgagttcgatcgccgggtcaacgaa
ggcctggacctgccggccggtgatctgttcggtggcggcgcggcggtggagtacagctgc
gagcccaagctcgatggcctggcagtcagcctgctgtaccaggatggcgtactggtacgc
ggcgccacccgtggcgatggcaccaccggtgaagacatcagcgtcaatgtgcgtaccgtg
cgcaacattcccctcaagctgcaaggcagtggctggccggcaaccctggaagtgcgcggt
gaagtgttcatgtccaaggccggcttcgagcgcctgaacgctgcgcaactggaagcgggc
ggcaagactttcgccaacccgcgcaacgcagcggcgggcagcctgcgccagctggattcg
aagatcaccgccagtcggcccctggagttctgctgctatggcctgggccaggtcagcgcg
gacatcgccgacacccatatcggcaaccttgaacggttgaagcagtggggcatgcccatc
agtcgtgaactgcggctggccaagggcatcgacgaatgcctggactactaccgcgagatc
ggcgagcggcgcaatgcgttgccttatgagatcgacggcgtggtgttcaaggtcaacagc
atcgcctcccagcgggaactgggtttccgtgcccgggaaccgcgctgggccatcgcccac
aagtttccggccatggaagaactcaccgagttgctggacgtggagttccaggtcggtcgt
accggtgccgtgacgccggtggcgcgcttgcagccggtcaaggtggctggggtcactgta
tccaacgctactttgcacaacatggatgaagtggcgcgcctgggcttgatgatcggtgac
acggtgatcatccgccgtgccggcgacgtgattccgcaagtggtgcaagtggtgaccgag
cgtcgtccggagaacgcccgcccggtgcagatccccgagagctgcccggtctgtggttcc
cacgtagagcgcacgcaactggtcaagcgcagcaagggccgggaaaccgtcagcgaaggt
gcggtgtatcgctgcgttggccggctggcctgcggggcccagctcaagcaggcgatcatc
cattttgtgtcccgtcgtgccatggatatcgaaggcctgggggacaagaccatcgaacag
ttggtggacgagaaccttattgcctcgccggctgatctctacaggctcaaatacgagcag
atcatcgacctggaaggctttgccgaggtgtccagcaacaaactgctcaaggccatcgaa
gacagcaagcgtccggccctggcgcgcttcatctatgccctgggtatcccggatgtcggc
gaggaaaccgccaaggtcctggcgcgctccctgggcagcctggaacgggttcagcaggca
ctgccgcaagtgctgacctatctgccggatgtcggtctggaagtggctcacgaaatccac
agcttctttgaggacagtcataaccaggaagtcatcggttccctgctggcggcagatcaa
tgcggcctggtactgcaggatcagggcgaactgggcgccgaattcgccgccagcaccacc
ctgggcggcatgctcgacaagctcaacatcccttcagtaggcccgggcgccgcgcagaaa
ctggcggacaagttcggctcactgcaaggcgtgatcgaggccgactggctggacatgcgc
caggcgctgccggagaagcaggccaaggcggtgcgtgaattcttcgacaacccggccaat
gcacaactggcccaggccatcgagcagcagctgcaggcctttggcatgcattggcaaagc
gagaagaaggtggttgcgggcctgtcgctggcggggcagacctgggtgcttacgggctcc
ctggaactgatgagccgcgacgtggccaaggacaagctggaaagccttggtgccaaggtg
gcgggttcggtctcggcgaagactcactgcgtggtggccggccccggcgccggttccaaa
ctggccaaggccaacgaactggggctcaaggtgctggacgaagaagccttcgtggctttc
ctgaccgagcacggcgtcccgacctga
DBGET
integrated database retrieval system
