Pseudomonas protegens CHA0: PFLCHA0_c57430
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Entry
PFLCHA0_c57430 CDS
T02671
Symbol
ligB
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pprc
Pseudomonas protegens CHA0
Pathway
pprc03030
DNA replication
pprc03410
Base excision repair
pprc03420
Nucleotide excision repair
pprc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PFLCHA0_c57430 (ligB)
03410 Base excision repair
PFLCHA0_c57430 (ligB)
03420 Nucleotide excision repair
PFLCHA0_c57430 (ligB)
03430 Mismatch repair
PFLCHA0_c57430 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprc03032
]
PFLCHA0_c57430 (ligB)
03400 DNA repair and recombination proteins [BR:
pprc03400
]
PFLCHA0_c57430 (ligB)
Enzymes [BR:
pprc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PFLCHA0_c57430 (ligB)
DNA replication proteins [BR:
pprc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PFLCHA0_c57430 (ligB)
DNA repair and recombination proteins [BR:
pprc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PFLCHA0_c57430 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PFLCHA0_c57430 (ligB)
MMR (mismatch excision repair)
DNA ligase
PFLCHA0_c57430 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PFLCHA0_c57430 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
HHH_5
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AGL87471
UniProt:
A0A2C9EV69
LinkDB
All DBs
Position
6390399..6392069
Genome browser
AA seq
556 aa
AA seq
DB search
MLPRAVVLLSLTPFFAQAACPDWPVPRATDEITALQQQLQRWDSSYYRDGRSLVADELYD
QARQRLLTWRQCFPQAPRAMDQPLLGAGGSIRHPIPHTGVEKLADANAVTGWLKGRDDIW
AQPKVDGVAVTLIYHQGQFQQALSRGDGVHGHDWTRAAWQIEAIPKRLSRPVDLLLQGEL
YLRLEQHVQARSGSLKARNRVAGWMARKQLTAAEAAQIGLFVWDWPQGPATLSERLEQLA
ALGFAEPREYSRPIGGFADAQQWRARWYRSPLPFASDGIILRQSRRPAAERWQAKAPYWI
AAWKYPYAQVLASVRQVDFRIGRTGRITPLLEIEPVTLDDRQIRRVSLGSLQRWRSLDIV
PGDQVAISLAGLSIPRLDEVVLRSTLRQSIQPPREADFHFLSCWQPSPGCEEQFLARLTW
LSSKQGLNLQNIGSRTWARLVETGRIKGLLDWLTLDQAELANIAGFGDRSSKRLLESLHS
ARQQPFPRWLKALGIPPSGSADLSGPWQALAMKSSLDWQNEAGIGAERAAQLVAFFRAPE
VLALQGALNSAGIEGF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgctgccaagagccgttgtgctgctgagcctcactccattcttcgcccaggccgcctgc
cccgactggccggttccccgtgccaccgatgaaatcaccgccctgcagcagcaactgcag
cgctgggatagcagctactaccgtgacggccgatcactggtggcggatgagctctacgat
caggcccgccagcgcctgctcacctggcgccagtgcttccctcaggctccccgggcaatg
gaccagcccctgctcggcgccgggggcagcatccgccaccccatcccccacacaggagtg
gaaaaactcgccgatgccaatgccgtgacggggtggctcaagggccgcgacgacatctgg
gcgcaacccaaggtcgacggcgtagcggtgaccctgatctaccaccaggggcagttccag
caagcactcagccgtggcgacggcgtgcatggccatgactggacccgtgcagcctggcaa
atcgaggccatacccaaacgactgtcacggcccgtcgacctgttgctgcaaggagagctc
tatctgcgcctggagcagcatgtccaggctcgctccggcagcctcaaggcgcgcaaccgg
gtggcaggctggatggctcgcaaacagctgacagcggcggaggccgcgcagatcgggctg
tttgtctgggactggccccagggcccggctacattgagcgaacgcctggaacaactggca
gccctgggttttgccgaaccccgcgagtacagccgacccataggcggcttcgccgatgca
caacagtggcgggcccgctggtatcgctcgccactgccctttgccagtgacggcatcatc
ctgcggcaaagccggcgtcccgccgccgaacgctggcaggccaaggccccatactggatt
gccgcctggaagtacccctacgcccaggtgctggccagcgttcgtcaagtcgattttcgt
atcggccgcacggggcgcatcacgcccctgctggagatcgagccggtgaccctggacgac
cggcagatccgccgtgtcagtctcggctcactgcaacgctggcgatccctggatatcgtt
cccggcgatcaggtagccatcagtctcgccgggttgagcatcccgcgcctggatgaagtg
gtactcagaagcaccctgcgccaaagcatccagcccccgcgagaagccgactttcacttc
ctgagttgctggcagccatcacccggctgcgaggaacaatttctggcccgactgacctgg
ctcagcagcaaacaaggcctgaacctgcagaatatcggcagccggacctgggcccggctg
gttgaaacaggccgtatcaaaggcctgctggattggctgaccctggatcaggcagagctt
gctaacattgccggctttggtgatcgcagcagcaagcgtttgctcgagagcctgcacagc
gccaggcaacagcccttcccacgctggctcaaagccctcggcatcccgcccagtggctcg
gccgacctgagcgggccatggcaggccctggccatgaaaagcagcctggactggcagaat
gaagccggtatcggagcggagcgggccgcacaactggtggcgttttttcgcgctccagag
gtcctggccttgcaaggcgccctgaacagcgccggtatcgaaggtttttag
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