Pseudodesulfovibrio profundus: DPRO_0830
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Entry
DPRO_0830 CDS
T05258
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DPRO_0830 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprf03400
]
DPRO_0830 (mfd)
Enzymes [BR:
pprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DPRO_0830 (mfd)
DNA repair and recombination proteins [BR:
pprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DPRO_0830 (mfd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
SOB57720
UniProt:
A0A2C8F7A6
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All DBs
Position
DPRO:complement(833957..837379)
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AA seq
1140 aa
AA seq
DB search
MVRVFKSGPATQAFLGTYLLSKGKSPVIVLPGAAEFKQMQALLALFSGSDQSLSPVWEHD
WIAFPPYLAQQPDAVAWSQRWAALYALHYGKKPCGLIMTVDNLLPHWPAAEVLQENWVTL
NKGEEMSPEILLEQLVSWGYTRRKIVTGPGDMAMRGDILDLHAPGYDLPLRLEFFGDFLE
EIRLFDGATQRSKADLAEAVLLPVAPGITTDSYTDQARSVWKRLRTTGEMSASEEHALTE
RLESNDGFVWPGMYYEEPVGLEAHFLKDSVFLLSSGSTLRARLEDQDQAWRDYVDEQYRQ
HSVRWPLRFFGRSHEGARQVWQGSRQIVFEELTIGREKNGIDLAESPYSDFTDLFWKPEA
SRRPWSALMAGIKEWHRTQFQTILSFRSERSRKKFLKLAEQEHLPISLDYSPRAQGIFAL
VSPLRKGMELVWNQTRILGEEVLQPEPPRAHGGRDKAFKGLEKYDDLSEGDLLVHRDYGL
AQFGGLHSMKLGDAANDYLLLFFSGDDKLYLPVDRLKLVQRFKGPEGAKQPSLDKLGGTR
WAKTTARVRKAIEKIAHELVEMYAFRRVAKGFQYGPLDEMYADFEATFGFEETPDQDKAV
KDVFRDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAALEGLQTALLCPTTVLAEQHYQTF
MKRMEGFPVRIGLLSRFVSRKRQKTVLEAASRGEIDILIGTHRLLSKDVELPNLGLLILD
EEQRFGVKHKEKLKQFRNNIDVLTLTATPIPRTLQLSLSGIRGLSVIETPPVDRKPVETA
ISERDKLALQGILRRELDRGGQVYWVYNRVNGLERVADFVRELAPDAKVGMAHGKMTEKG
LEETMRGFWHGEIDVLVCTAIVESGLDFPNANTLIVDQAQLFGLGQLYQLRGRVGRSDRQ
AYAYFVVPNVEDLSEVVRKRLRIILDMDYLGAGFKIAMEDLRLRGAGNILGEAQSGQIAK
IGLDLFLEMLEEEVRRVRGESSARVSEPELNFIFEAHIPSSFIPDAKERLRYYKALSAAD
DEYSLRELEAEIKDRFGHLPEPVESFLGVLRIKQVLSHLQADRAELYPGRIVVSWGDNAA
STDPQVLLKWVDERNDRAKLLPPAKLELRYKVTESMRVALEDAALELELLQETPAEAVKQ
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
gtggtccgggtcttcaaaagtgggcctgcaacccaagcgtttcttggaacctacctcctt
tccaaagggaagagtcccgtcattgtcttgcctggagcggctgaattcaaacagatgcaa
gcactgctggcactgttttccggttcagatcaatctttgtcacccgtatgggagcatgat
tggattgctttccctccctacctcgcccaacagcccgacgcggttgcttggagtcagcgt
tgggctgcgttgtatgctctccattatggtaaaaagccatgcggactgattatgactgtg
gacaatctgttgccgcactggcctgcggcggaagtcctacaggaaaactgggtgaccttg
aacaagggcgaggagatgtcgcccgagattctattggagcagttggtctcgtggggctat
acacggcgtaagattgtcactggtccaggtgatatggccatgcgtggtgatattctcgat
ttgcatgccccgggttatgacttgccattgagattggagttctttggagacttcctggaa
gagattcggttgttcgatggtgcgactcagcgatcgaaagctgacctcgcagaggcggtg
cttttgccagtggcgcccgggatcaccactgacagttacacagaccaagctcggagtgtt
tggaagcgactgagaacgactggtgaaatgtccgcttctgaagagcacgcgttgactgag
cggctcgagtccaatgatggctttgtatggccggggatgtactacgaggaaccggtagga
ctggaggcgcatttcttaaaagactcagtgtttttgctttcatcagggagcacgttacga
gctaggttggaagatcaggatcaggcctggcgggactacgttgatgagcaataccgtcag
cacagtgtgcgttggcccttgcgattttttggacgatcccacgagggggctcgtcaggta
tggcagggttcccggcaaatagtatttgaagaattgactattggtcgcgagaaaaacggt
attgatctggctgagtccccgtacagcgactttaccgatttattctggaaacccgaagcc
tccagacgtccctggtcggctcttatggctggcattaaagagtggcaccgtacgcaattt
cagaccattttgagtttccgttctgagcgttcgcgtaagaaatttcttaaactggccgag
caggaacacctgcccatctcccttgattattcgccgcgagcacaaggcatcttcgcgctg
gtttctccattgcgaaaaggaatggagttggtctggaaccaaaccagaatcttgggcgag
gaagttcttcagcctgagccaccaagagcccatggtggccgagacaaggcgttcaagggg
ctggaaaagtatgatgatctgagtgagggagacctcctcgttcacagagattacggtctt
gctcagtttggtggcctacacagcatgaagctgggagatgctgccaacgattacctgttg
ttgttcttttccggtgatgacaagctgtatctgccggttgaccgtctgaaacttgttcag
cgtttcaaagggcctgaaggtgccaaacaaccatctttggataagctgggcggcacaagg
tgggctaaaaccaccgctcgtgttcgtaaagccattgaaaagatcgctcatgaacttgtg
gaaatgtacgctttccgtcgtgtcgcaaaagggtttcaatatgggccgctggatgaaatg
tacgccgactttgaagcgacattcggttttgaagagaccccggatcaggacaaagccgta
aaagatgtatttcgtgacatggaaaagcctgagcccatggaccgtcttgtatgtggtgat
gtcggatttggcaaaactgaagttgcgttgcgtgcggcatttcgggccgcacttgaaggg
ctgcaaacagcactcttgtgtccgacaacggtcttggccgagcagcattaccagacattc
atgaagcgaatggaaggcttccctgtcaggataggtcttttgagtcgtttcgtatcgagg
aagcgtcagaaaacagttctcgaagctgcgagcaggggggaaattgatatacttattggt
acccaccgacttctctccaaagatgtcgagttgccgaatctgggattgttgattctggac
gaagaacagcgattcggggtcaagcataaagaaaaactgaagcaattcagaaacaatatt
gacgtcttgacgttgacagccaccccgattccgagaacgttgcaactgtctctttccggt
attcgtggcctttccgtcattgaaactccgccagtggaccgtaagccggtagaaacggct
atcagtgaacgtgacaaattggctctgcagggaattcttcgtcgagagcttgatcgtggt
ggtcaggtctactgggtgtataaccgtgtgaacgggcttgagcgcgtggcggattttgtt
cgcgagttggctcctgacgccaaagtcgggatggcccacggtaaaatgaccgaaaaagga
cttgaggaaaccatgcgaggcttctggcatggagaaatcgatgtgctggtctgtacggcc
attgtcgagtccgggcttgattttcccaatgccaacacgcttatagttgatcaggcgcag
ttatttggccttgggcaactctaccaattacgtggccgagtgggacgtagcgacaggcag
gcgtatgcgtattttgttgttccaaacgtggaagatctttcggaagttgtcagaaaacgc
cttcgcataatattggatatggattacttgggcgcagggttcaagattgccatggaagac
ttgcgtctgcgcggtgcgggtaatatccttggtgaagctcagtctggtcagattgccaaa
atcggccttgatctatttttggaaatgcttgaggaagaggtacggcgtgtgcgaggagag
tcttcggcgcgagtctcggaacctgaactcaacttcatttttgaggctcatattccaagc
agcttcattcctgatgctaaagaaaggctccgttactacaaggcgttgtctgcggctgac
gacgaatattccctcagagaattggaggcggagatcaaggatcgcttcggtcacttaccc
gagcccgttgaatccttcttgggagtccttcgaatcaagcaggttctgtcgcaccttcaa
gccgatagggcagaattgtaccccggtagaattgttgtctcctggggggacaatgcagcc
tctacagatccacaggtccttttgaaatgggtggatgaacgcaacgacagagccaagttg
ctgcctccggccaaacttgaacttcggtacaaagtgacggagtcaatgcgagttgcactt
gaagatgccgcccttgaattggaattgttgcaggagactcctgccgaagcggtgaaacaa
taa
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