Pseudodesulfovibrio profundus: DPRO_1490
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Entry
DPRO_1490 CDS
T05258
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03030
DNA replication
pprf03430
Mismatch repair
pprf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DPRO_1490 (dnaE)
03430 Mismatch repair
DPRO_1490 (dnaE)
03440 Homologous recombination
DPRO_1490 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprf03032
]
DPRO_1490 (dnaE)
03400 DNA repair and recombination proteins [BR:
pprf03400
]
DPRO_1490 (dnaE)
Enzymes [BR:
pprf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DPRO_1490 (dnaE)
DNA replication proteins [BR:
pprf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DPRO_1490 (dnaE)
DNA repair and recombination proteins [BR:
pprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DPRO_1490 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF6282
Motif
Other DBs
NCBI-ProteinID:
SOB58384
UniProt:
A0A2C8F8B1
LinkDB
All DBs
Position
DPRO:1525522..1529064
Genome browser
AA seq
1180 aa
AA seq
DB search
MAEFVHLHVHTEYSLLDGAIRIKDLLSQAKDFGMPAVAITDHGSMYGAVTFYMAAQEMGI
KPIIGCEVYVAAGDIDDEKAHEKKEKGGGYHLVLLAKNQLGYKNLIKLVSTGYLEGFYYK
PRVSKYLLNKYSEGLVALSACLAGEVPRKLMNEGLDAGVEMAREYESIFPGNFYLELQDN
GIGDQTRLNDLLIKCAEKTNLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRM
DTKELYFKTPEEMEQAFAHVPEAIANTQKIAEMCNVEIELGNYYFPHYELSEGVSNLDEE
FIKLCKEGLQKRLDILKYDIDEDVYWKRLDYELGIIIEMGFPAYFLIVQDFINWAKDNRI
PVGPGRGSAAGSIVAWALKITNIDPLPYDLLFERFLNVERVSMPDIDVDFCERRRLEVVK
YCAEKYGHDRVAQITTFGTMKTKAVIKDVGRALGLSFGETDRIAKLVPDDPGVMAKLLGV
EKAKINVPNAVKGVVELGDMVATDPRVEKLIDISTRLEGLCRHASTHAAGVVISDKPMTE
YLPLYKGKKGEIVTQFDMKKVEKAGLIKFDFLGLRTMTVIEDCIDIIREQGKDAPDLDTL
PLDDQATYSVFARGDTDGVFQVESSGMRKYLRMLRPDCFEDIVAMLALYRPGPLGMIGSH
GVSMVDEFIMRKHGEIEVTYPHESLTDTLKPTYGVMVYQEQVMATAMTIANYSLGEGDLL
RRAMGKKIAEEMAKQRSRFLEGARENKIPDKTANEIFDTMEKFAAYGFNKSHSAAYALIS
YHTAYLKAHFPVEFMAALMSTEMNNTDKIIMYVNACRDMDIKVKQPDINAGMARFSVLEG
DILFAMAAIKNVGEEAINEIVAERNENGPFKDIFEFCERVNLRRVTKRVMESLIKAGALD
CFNCSRAALLEDLEKAVAYGQKKAKEKDSGMINMLGMLGGQDEKIEAMSPTCSSCEEFDD
REKLKMEKEVLGFFLSGHPLLAYRHELIRLRTSTLEECKTIPNGSEVRVAVIIPDYKQIL
TRKGDPMAFCMGEDLLASGEITMLPNVWEEAKEKVDADRPLFIQGKIDLREEPGQEDAPK
TAKILAEKVLFLADAVQGSDQPVSLWVGEKKCNEEHLGALQGLIRKYPGSTAVNLGVITP
ESVVTLKLGNGWQVYPGRDFWKDVEKWQNGDAIRFQAENE
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaattcgtccatttacatgttcatacggaatacagcctgctcgacggagcaatc
cgaatcaaagacctgctttcacaggccaaggatttcggcatgcctgccgtggccatcaca
gaccacggatccatgtacggcgccgttacgttttacatggctgctcaggaaatgggcatc
aagccgatcatcggttgcgaggtatatgtcgcagccggtgacattgacgatgaaaaggct
cacgaaaagaaagaaaagggtggcggctaccaccttgtcctccttgccaagaatcagctc
ggctacaagaatctgatcaaactcgtttcgaccggctatctggaagggttctactataaa
ccccgtgtatccaaatacctgctcaacaagtattccgaagggttggtcgctctctccgcc
tgtctggcaggcgaggtgccacgcaagctgatgaacgaaggactggatgccggcgtggaa
atggcccgtgaatacgagtccatctttcccggcaacttctacctcgaattgcaggacaac
ggcattggcgaccagactcggttgaacgatctgctcatcaagtgcgccgagaagaccaac
ctgcctctggtggcgaccaatgactgccactacctgaccgccgaagactatgaagcgcac
gacaccctgctctgtatccagacccagactacggtggatgcggaaaagcgcttcaggatg
gataccaaggagctgtatttcaagacccccgaggagatggaacaggcctttgcccatgtc
ccggaagccatagccaacacacagaaaattgcagagatgtgcaatgtggagattgagctg
ggcaactattatttcccccactacgagctctccgaaggcgtatcgaaccttgatgaagaa
ttcatcaagctctgcaaggaaggtctccagaagcgtctggacatactcaagtacgatatt
gatgaggatgtttactggaagcgcctcgattacgaactcggcatcatcatcgagatgggc
ttcccggcctactttctcatcgttcaggacttcatcaactgggccaaggacaaccgcatt
ccggtcgggccggggcgtggttcggcagcgggctccattgttgcgtgggcgctgaagatc
accaacatcgaccccctcccctacgacctgctgtttgaacgattcctgaacgtcgaacgt
gtctccatgccggatatcgacgtcgacttctgcgaacgccgccgtctggaagtcgtcaag
tattgtgccgagaagtacggtcacgaccgtgtggcgcagattacgaccttcggaaccatg
aagaccaaagcggttatcaaggatgtcgggcgtgcccttggtctatcctttggcgaaacc
gaccgcatcgccaagctggtgccggacgacccgggagtcatggccaagctgctgggtgtg
gaaaaggcgaagatcaacgtacccaacgccgtcaaaggcgtagtcgaactgggcgacatg
gttgccaccgaccccagagtcgaaaagctcatagatatttcaacccgtctggaaggactc
tgccgccacgcgtcaacacacgcggcgggtgttgtcatttccgacaagcccatgaccgaa
tatcttcctctctacaaagggaagaagggtgaaatcgtaacccagttcgacatgaaaaag
gtcgaaaaagccggactgatcaagttcgacttcctgggtctgcggaccatgacggtcatc
gaggactgcatcgacatcatccgtgagcagggcaaggatgctccggacctcgacactctc
ccgctggatgaccaggcgacgtacagtgttttcgcacgaggcgacaccgatggcgtattc
caggttgagtcgtcggggatgcgcaagtatctgaggatgttgcgtcctgactgctttgaa
gacatcgtcgccatgctcgccctgtaccgtcccggcccgctgggcatgatcggctcgcat
ggcgtcagcatggttgatgaattcatcatgcgtaaacatggtgagatcgaagtcacgtat
ccgcatgaatcgctgacagacacgctcaagcccacctacggcgtcatggtctaccaggag
caggtcatggccacggcaatgaccatcgccaactactcgcttggtgaaggtgacttgctg
cgtcgtgcgatgggtaagaagatcgccgaggagatggcgaagcagcgctcccgcttcctc
gaaggcgcacgggaaaacaagattcccgacaagaccgccaatgaaattttcgacaccatg
gaaaagttcgcagcctacggcttcaacaagtcgcactcggctgcgtacgcgctcatttcg
tatcacacggcgtacctcaaggcgcatttccctgtggagttcatggctgctctcatgtcc
acggaaatgaacaacacggacaagatcatcatgtacgtgaacgcctgccgggatatggac
atcaaggtcaagcagccggacatcaacgcgggtatggcccggttctccgtgctcgaaggg
gatatcctttttgccatggctgccatcaagaacgtgggtgaggaagcgatcaacgaaatc
gtggccgagcgcaacgaaaatggtcccttcaaggatatcttcgagttctgcgagcgcgtg
aaccttcgtcgagtcaccaagcgtgtcatggaatctctgatcaaggcaggagcactggat
tgcttcaactgctcacgtgccgcgctccttgaagatctggaaaaggctgttgcctacggc
cagaaaaaggccaaggaaaaggattccggcatgatcaacatgctgggaatgcttggcggt
caggatgaaaagatcgaggccatgtcccctacctgttcatcctgtgaagaatttgatgac
cgtgaaaagctcaaaatggagaaagaggtcctcggcttctttctgtccggccacccgttg
ctggcctaccgccacgaactgatccgcctgcgaacctccactctggaggaatgcaagacg
atccccaatggcagcgaggtccgtgtggctgtcatcatcccggactacaagcagattctc
acccgcaagggcgatcccatggccttctgcatgggcgaagacctgctggcgtccggtgag
atcaccatgcttcccaatgtgtgggaagaggccaaggaaaaagtcgatgccgaccgtccg
ctcttcattcagggcaagatcgacctgcgcgaagaaccgggacaggaagacgcacccaaa
acagccaagatactggctgaaaaggtcctgtttctggctgatgccgtacagggctcggac
cagccggtttccctgtgggttggcgaaaaaaaatgcaacgaggaacacctgggcgcgctg
cagggtctcatccgaaagtatccgggcagcaccgcggtcaatctcggggttatcactcct
gaatccgttgtaaccctcaagctgggcaacggctggcaggtctacccgggccgtgatttc
tggaaagacgtggagaagtggcaaaacggtgatgccattcgattccaggcggagaatgag
taa
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