Pseudodesulfovibrio profundus: DPRO_1862
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Entry
DPRO_1862 CDS
T05258
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPRO_1862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprf03019
]
DPRO_1862
03009 Ribosome biogenesis [BR:
pprf03009
]
DPRO_1862
Enzymes [BR:
pprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DPRO_1862
Messenger RNA biogenesis [BR:
pprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DPRO_1862
Ribosome biogenesis [BR:
pprf03009
]
Prokaryotic type
rRNA helicases
DPRO_1862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Flavi_DEAD
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
SOB58762
UniProt:
A0A2C8FA57
LinkDB
All DBs
Position
DPRO:1908754..1910409
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AA seq
551 aa
AA seq
DB search
MTTFKDLGLSERTLAALEAKGFNAPTPIQERTIPLLIEGNIDIVGQAQTGTGKTAAFGLP
IIECAQEKEKRVQALILTPTRELAIQVADEINSLKGQKNLRVLPVYGGQAIHMQFKALRR
GVDVVVGTPGRIMDHLQRGTLHIDNLDFFVLDEADEMCNMGFVDDVREILASANTDRRTL
LFSATMPREVMRIAKEFMGDYETIKVETQKQDIPLIRHIFHEMADSDRFEALCRVIDAHS
GFYGLVFTRTRADADRVAERLNERGYPAEPIHGDLSQSRREDILNRFRRRRATILVATDV
AARGIDVPDLTHVVNYALPQDPPTFVHRTGRTGRAGKEGIAITLIAPGEFRKLMYITKST
GTEITKQKLPRIQDVIYSKKSRMIARLEALIEDDGHDAYTSMARDLVDEKDPTDVVAALL
RHTFGDELIESSYREIDTVTQATRGRADLVCALGRSQGMHPKAFVDFIAKTAQLKPWSIQ
HVRVQANRTTFTVPGAEAEKVIKRVYSREGNPLVTVGEPKKKPPYRRDFKKGGPPRGKRP
FKKKSYKPKSD
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgaccacatttaaggaccttgggctgtccgagcgcactcttgctgcactggaagccaag
gggttcaacgctccaaccccgattcaggagcgcaccatccctctacttatcgagggtaac
attgacatcgtgggacaagcgcagaccggaaccggcaaaaccgccgcgttcggtctccct
attatcgaatgcgcccaagaaaaagaaaagcgggtacaggcactgatcctcactcccacc
agagagctggcaatccaggtcgcagatgagatcaattcgctcaaaggacaaaaaaacctg
cgcgttctgcccgtctacggtggtcaggccattcacatgcagttcaaggcacttcgccgt
ggcgttgatgtcgttgtcggtactccgggccgcatcatggaccacctccagcgcggcacc
ctgcacatcgacaatctcgacttcttcgttctcgatgaagcagacgagatgtgcaacatg
ggctttgtagatgatgtccgcgaaattctggcttctgccaacaccgaccgccgcaccctg
ctcttttccgccaccatgccccgcgaggtcatgcgtatcgccaaagagttcatgggcgat
tacgaaaccatcaaggtcgaaacccagaagcaggacatcccgcttattcgtcacatcttt
catgagatggccgactcggatcgctttgaagcgctgtgccgtgtcattgatgcccactcc
ggtttctacgggctggtcttcaccagaacacgcgccgacgcagacagagtggctgagcgc
ctgaacgaacgaggctaccctgccgagccgattcacggcgacctctcgcagtctcgtcgc
gaagatatcctgaaccgcttccgcagacgccgggcaaccattcttgtggccaccgacgtt
gccgctcgcggcattgacgttcccgacctcacccatgtcgtgaactacgccctgccgcag
gatccgccgacattcgtgcaccgtacaggccgcaccggtcgagctggcaaggaaggtata
gccatcaccctgatcgcccccggcgagttccgcaagctcatgtacatcaccaagtccacg
ggtacggaaatcaccaagcagaaactgccgcgaattcaggatgtgatctactccaagaag
agccgcatgattgcgcgcctggaagcccttatagaagatgatgggcatgacgcctacacc
tccatggcccgcgacctcgtggatgaaaaagacccgaccgatgttgtcgccgccttgctg
cgacacaccttcggcgatgaactgatcgagtccagctaccgcgaaatcgacacggttacg
caagccactcgcggtcgcgccgatctggtgtgtgctctgggacgatcccagggtatgcat
cccaaggcctttgtggatttcatcgcgaaaaccgcacagctcaagccgtggtccatccag
cacgttcgggttcaggccaaccggacgaccttcaccgtccctggtgctgaagccgagaag
gtcatcaagcgagtttactctcgcgagggcaatccgctggtcacagtaggtgaacccaag
aagaaaccgccctaccgtcgcgatttcaaaaaaggcggacctcccagagggaagcgcccg
ttcaaaaagaaaagctataaacccaagtctgactaa
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