Pseudodesulfovibrio profundus: DPRO_2135
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Entry
DPRO_2135 CDS
T05258
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPRO_2135 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprf03019
]
DPRO_2135 (recQ)
03400 DNA repair and recombination proteins [BR:
pprf03400
]
DPRO_2135 (recQ)
Enzymes [BR:
pprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DPRO_2135 (recQ)
Messenger RNA biogenesis [BR:
pprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DPRO_2135 (recQ)
DNA repair and recombination proteins [BR:
pprf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DPRO_2135 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Motif
Other DBs
NCBI-ProteinID:
SOB59039
UniProt:
A0A2C8F9D6
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All DBs
Position
DPRO:complement(2193071..2195293)
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AA seq
740 aa
AA seq
DB search
MHQPHTRPPSTPNEVLSSVFGFDAFIGLQESIINNTLAGGDSLVLMPTGGGKSLCYQIPA
MLRQGVGICVSPLIALMQDQVQGLTQMGVRAACLNSSLDPQSAWEVEQQLETGQLDLLYV
APERLFRPGFLDFLARCNPCLFAIDEAHCVSQWGHDFRPEYMQLSILHERFPDVPRLALT
ATADKPTQRDIVNNLHLGQAQVYATGFNRPNISYTVLPKNNGRKMLLQFIRDNHPGDAGI
VYRLSRKKVEKTAEFLNKHGVTALPYHAGLSQAERYRNQERFMREEGVVMVATVAFGMGV
DKPNVRFVCHLEPPKSLEAYHQETGRAGRDGLPASAWMCFGMQDIAVLRSMIESGEAAGT
RKRVEHSKLGSMFAFLEAASCRRQALLGYFGETIEPCGNCDNCITPVDTWDGTVEAQKAL
SNIFRTEQRFGVNYLAHVLVGKETDQIRRFNHTELSTFGCGEELSLDQWKSVYRQLLAGG
YCSVDPERFNALTLNERSWPILKGERPIRFRTDPIVPKRSKKSKPARAAAADILTNWETE
ELFDSLRELRLSIAEEQSVPPYAIFPDKTLLELVKYRPTSLESFGCISGVGEVKLERFGS
TFLAGLHAHEEKHGRPANLAEIPSDRADKRDKQKQKKQELSATAQESLTLFREFGDVEEV
ASRRCLKPASIWNHLSQAVKCGKLNYRELVKLPDVEIDLIKSTLRDFKKRGILALTPVHD
AFEGKYPYEVLRVIRSSANS
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgcatcagccccacacccgtccaccatccactcccaatgaggtactgagttccgtattc
ggctttgacgccttcatcggtctacaggaatccatcatcaacaacacccttgcgggcggt
gactcgctggtactcatgcccacgggcggaggcaaatccctctgctatcaaatccctgcc
atgctccgtcagggtgtcggcatatgcgtttccccgctcattgccttgatgcaggatcag
gtgcagggactgacgcagatgggcgttcgcgctgcctgtctcaattcttcccttgaccca
caatcggcctgggaagtggaacaacaactggaaaccgggcaactggacctgctctatgtc
gccccggaacgtctgttccgtcccggctttctggattttctggcgcggtgcaatccatgt
ctgttcgccatcgacgaagcccactgtgtttcccaatgggggcacgatttccggccggaa
tacatgcagttgtccatccttcatgagcgattccctgatgttccgcgtctggccctcaca
gccacagccgacaaaccgacacaacgggatatcgtcaacaatctgcaccttggtcaagcg
caggtctatgccaccggattcaaccgacccaatatttcctacacggtcctgcccaagaac
aacgggcgcaagatgctcctgcaatttatccgggacaaccatcccggcgatgcagggatc
gtctaccgactcagccgcaaaaaggttgaaaagaccgctgaatttctgaacaagcacgga
gtgaccgccctcccctatcatgccggattgtcacaggccgaacggtaccgcaatcaggag
cggttcatgcgggaggaaggggtggtcatggtggcgaccgtggcattcggcatgggtgtg
gacaagcccaacgtccgtttcgtgtgccatctggagccgcccaaatcgctggaagcatac
catcaggagacaggtcgcgccggacgtgacggtctgccagcctcggcgtggatgtgcttt
ggcatgcaggacattgccgtgctccgatccatgattgaatccggtgaggcagcagggacg
cgcaaacgggtggagcattccaaactcggctccatgttcgctttcctggaagctgccagt
tgccgtcgacaggcattgctcggctattttggcgaaaccattgagccgtgcggtaattgc
gacaactgtatcaccccggtggacacctgggatgggactgtggaagcgcaaaaggccctg
tccaacatctttcgtaccgaacagcgattcggcgtcaactatctggctcatgttcttgtg
ggcaaggaaaccgatcagattcggcgcttcaaccacaccgagctgtccaccttcgggtgt
ggcgaagagttgagcctggaccagtggaaatccgtgtatcggcagctactggccggtggg
tattgctcggtggaccctgaacgattcaacgctctgacgctcaatgaacgctcgtggccc
atactcaaaggcgagcgccccatccgcttccgcaccgaccccatcgtgcccaagcgctcg
aaaaagtccaaaccggcgagagctgccgctgccgatatcctgaccaactgggaaacagaa
gaactgttcgattccctacgcgaactcaggctctccattgcagaagagcagtctgttcct
ccttacgctatctttccggacaagacgctgttggaactggtcaaataccgtcccacctcg
ctggagtcatttggctgcatttccggtgtcggcgaggtcaagctggagcgattcggctcc
acgttccttgccggtctgcatgcccacgaagaaaagcacggcagacccgccaacctggct
gaaattccttcggacagagcggacaagagagataagcagaaacagaagaagcaggaatta
tccgccacagcccaggagtcgctgaccctgttcagagaattcggtgatgtggaggaagta
gccagccgccgctgcctcaagcccgcatccatttggaatcatctttcccaggcagtcaaa
tgcggcaagctgaattaccgggagctggtcaagctgccagatgttgaaatcgacttgatc
aaatccacattgcgcgacttcaagaaacggggaattctcgccctgacacccgtacatgat
gcctttgagggcaagtatccatacgaagtgctgcgtgtcatccgctccagcgccaacagc
taa
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