Pseudodesulfovibrio profundus: DPRO_2335
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Entry
DPRO_2335 CDS
T05258
Name
(GenBank) RNA polymerase sigma factor
KO
K03089
RNA polymerase sigma-32 factor
Organism
pprf
Pseudodesulfovibrio profundus
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprf03021
]
DPRO_2335
Transcription machinery [BR:
pprf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DPRO_2335
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r1_2
Sigma70_r4
Sigma70_r3
GntR
HTH_11
Motif
Other DBs
NCBI-ProteinID:
SOB59241
UniProt:
A0A2C8F9Y5
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All DBs
Position
DPRO:complement(2398455..2399603)
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AA seq
382 aa
AA seq
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MSFSYSYISIEPEAHKARYIDMSSKDNDTQLNSNIMEPELVEEDIDEQAIDEEALKSAHV
EGKTVSSQAVPVSPPAKVEPIETLLPAFAKPTSKEVRVRDPLQLYLREIARFPMLDPDEE
YALAKRVQDENDQDAAFKLVSSHLRLVVKIAMDFQRKWMQNALDLVQEGNVGLLKAVTKF
DPEKGIKFSYYAAFWIKAYILKYIMDNWRMVKVGTTQTQRKLFYNLNKERQRLLALGFDP
TTEALSKSLGVSETDVEEMDQRLSKNDMSLNTPLGEDSDATKMDFLPSFGPGVEETIASD
QIVDLMLENIKAIRPSLNEKELAILDDRLLSEDPVTLREIGERFEVTRERVRQIEARLLV
KIREYMTEKIKGFSKDWVLEHE
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttcttactcttatattagtattgaaccggaagcccataaggcccgatatata
gatatgtcatccaaagataatgatacacagttgaattcgaacatcatggagccggagctt
gtcgaagaagacattgacgagcaggccatagacgaagaggcactcaaatctgcccatgtg
gagggcaaaaccgtcagctcccaggcagtgccggtttccccgcccgccaaagtggaaccg
attgaaacgctgcttcccgcctttgccaagccgacttccaaggaagtccgagtacgcgac
ccccttcagttgtacctgcgggagattgcgcgatttcccatgctcgacccggacgaggaa
tacgcgctggccaaacgcgtgcaggatgagaacgatcaggatgccgcattcaagctggtt
tcctcccatcttcgccttgtggtcaagattgccatggattttcagcgcaaatggatgcag
aacgcccttgatctggtgcaggaaggcaatgtcggccttctcaaggccgtaacaaaattc
gatcctgaaaagggaatcaaattttcctactatgctgcattctggatcaaggcgtacatc
ctgaaatacatcatggacaactggcgcatggtcaaggtgggcaccacccagacgcaacgc
aagctgttctacaacctgaacaaggaacggcagcgccttctggctctcggatttgatccg
accaccgaagcgctctccaagtccctgggggtgagcgagaccgatgtcgaagagatggac
caacgtctgtccaagaacgacatgtcgctcaacacgccccttggcgaggactcggatgcc
acgaaaatggacttcctgccgtcgtttggccccggcgtcgaggagaccatcgccagcgac
cagatcgtggacctgatgcttgaaaacatcaaagcgatccggccctcgcttaatgagaag
gaactggctatccttgatgaccgtctgctctcagaggaccccgtcaccctgcgcgaaatc
ggggaacgattcgaggtgaccagagagcgggtgcggcagatcgaagcacgcctactggtc
aagattcgggaatacatgaccgaaaagatcaaagggttttccaaagactgggtactggaa
cacgaataa
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