Pseudodesulfovibrio profundus: DPRO_2508
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Entry
DPRO_2508 CDS
T05258
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03030
DNA replication
pprf03430
Mismatch repair
pprf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DPRO_2508
03430 Mismatch repair
DPRO_2508
03440 Homologous recombination
DPRO_2508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprf03032
]
DPRO_2508
03400 DNA repair and recombination proteins [BR:
pprf03400
]
DPRO_2508
Enzymes [BR:
pprf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DPRO_2508
DNA replication proteins [BR:
pprf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DPRO_2508
DNA repair and recombination proteins [BR:
pprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DPRO_2508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
SOB59416
UniProt:
A0A2C8F9G2
LinkDB
All DBs
Position
DPRO:2586332..2586871
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AA seq
179 aa
AA seq
DB search
MAHTIDNTRFVAIDFETADPKRDSACAVGIVVVDKGEIVEREYRLIRPPRKKFNPYCVRV
HGIYWEDVCDEPSFGEIWPEIEHLFEGADFLVAHNAAFDKSVLNTCCREAGCVTPAQPFL
CTVQLSRKTWELACNKLNAVCDYLGIALNHHHAGSDAEACALIAVNGLRENPAFLRKIL
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atggctcacaccattgataatacccgttttgtcgccattgattttgaaaccgctgatccc
aagcgcgactctgcctgcgccgttggtatcgtggtggtggacaaaggcgaaattgttgag
cgtgaataccggttgatccggccaccgcgcaagaaattcaatccctattgtgttcgtgtt
catggcatctactgggaagatgtttgtgatgaaccttcgttcggcgagatatggccggag
atcgaacatctgttcgagggggcggattttctggtggcgcataacgccgcttttgacaaa
tctgtgctcaatacctgttgccgggaagccggttgcgtaaccccggcccagccgtttctc
tgtacggtccagctgtcgcgaaagacctgggagctcgcctgtaacaagctcaacgcggtc
tgtgactatctcggcattgccctgaaccatcaccatgccgggtcagacgccgaagcgtgc
gcgcttattgccgtgaacggcttgcgcgagaatcccgcctttcttcgcaagattctgtag
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