Pseudodesulfovibrio profundus: DPRO_3048
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Entry
DPRO_3048 CDS
T05258
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPRO_3048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprf03019
]
DPRO_3048
03009 Ribosome biogenesis [BR:
pprf03009
]
DPRO_3048
Enzymes [BR:
pprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DPRO_3048
Messenger RNA biogenesis [BR:
pprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DPRO_3048
Ribosome biogenesis [BR:
pprf03009
]
Prokaryotic type
rRNA helicases
DPRO_3048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
RecX_HTH3
Motif
Other DBs
NCBI-ProteinID:
SOB59958
UniProt:
A0A2C8FB06
LinkDB
All DBs
Position
DPRO:3132693..3134465
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AA seq
590 aa
AA seq
DB search
MEKENTNEVVNENEAVDSSLPKMRFEDLPERLHDACVRVGWDKLMPVQELALPFLLNDND
VMVQARTGSGKTGAFVLPLLEKLDADLMECQALVMVPTRELAQQVASEARTLAGDKGINV
VAVYGGVGYKQQLDAFRDGAQLVVGTPGRILDHLVRRSLDLHKLKVLIFDEADRMLSVGF
YPDMVEVKRYLPPKIDGSYMFSATFPQSVLRLAREFMVDPEFLSLSSDETNVSAIAHQFV
EVQAMGKERKLIKLIELENPSSAIIFANTKRNVEFTAALLSQFGFDAEGLTSDLSQNKRE
QLMARIKAGQLRFLVATDVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGASGKA
ITMVDVIQKMELERIATRFKIKFEEIKDPTEEDVAAIIEERLTALLEKRFRKLKPLERER
AARFLPLVQKYAADEEAVGLIAMLLDEIYQNTLHGKPEVPVAEQEKPREQRKPNQPSKGN
GKKPQRNRKPRSGGDHGGHGRPSGNDRSEGNRSDDKPSENRRPKGKRNDENRSGDKPKPR
KPSRPAGEQQSEPRPERRPEQSSGADKGGDGESGTKSRPRRRRPRRRRRR
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggaaaacaccaacgaagtggtgaacgagaacgaagctgtagattcttcgctc
ccgaagatgcgttttgaggatctgcctgagcggttgcacgatgcgtgcgtgcgcgtgggc
tgggataaattgatgccggtgcaggagttggcgttgcctttcctgctcaatgacaacgat
gtcatggtccaggctcggaccggctccggcaagaccggtgcatttgtgcttcccctgctg
gaaaaactcgatgcagacctgatggaatgtcaggctctggtcatggtacccacacgcgaa
ctggcgcaacaggttgcgagcgaagcccgtactttggcaggagacaagggtatcaatgtc
gtcgctgtttatggtggcgttggttacaagcagcagttggatgccttccgcgacggcgct
cagctcgtggtcggtacgcccggtcgtatcctggaccacctggtcaggcgaagccttgat
ctgcataaattgaaagtgctgattttcgatgaggccgaccggatgctgtctgtcggtttt
taccccgatatggtcgaggttaagcgatacctgcccccaaaaattgatggcagctatatg
ttttccgctaccttcccgcagtcggtcctgcgtctggcgcgggaattcatggttgatccg
gaatttctcagcctgtccagcgatgagaccaacgtgtcggccattgcgcatcagttcgtc
gaggtccaggccatgggcaaggaacgcaagctgatcaagctgattgaactggagaatcct
tcttcggccattatctttgccaataccaagcgcaatgttgaatttacggcagcgcttctg
tcacagttcggattcgatgccgaaggattgacctcggacctgagccagaacaagcgcgaa
caactcatggcccgcatcaaggccggacaactgcgttttctggtcgctacagatgtggca
gcccgtggtatcgatatccccgaactctctcatgtcttcatgatggaaccaccggaagac
ccggagtcctacgtgcaccgcgcagggcgaaccggtcgcgccggggcatcgggcaaggca
atcaccatggtggatgtcatccagaagatggagcttgagcgtatcgccacacggttcaag
atcaaattcgaagagatcaaggacccgaccgaagaagatgtcgcagctatcattgaagag
cgccttaccgcactgcttgagaagcgattcagaaagctcaagccgcttgagcgtgaacgt
gctgcccgtttcctgccgcttgttcagaagtatgccgcagatgaagaagcggttgggttg
atcgccatgttgttggacgaaatttatcagaatactctgcacggcaagcccgaagtgcct
gttgctgaacaggaaaagcccagagagcaacggaagcccaaccagccctccaaaggcaat
ggcaaaaagccgcagcggaatcgtaagcctcggagcggcggcgaccatggtggacacggt
cgaccttcgggcaatgaccggtcagagggaaatcggtccgatgataagccctccgagaac
aggcgtcccaaaggcaaacgcaacgacgaaaatcgttcgggtgacaaacccaagccgagg
aagccttccaggcctgccggtgaacagcagtctgagccgcgcccggagagaaggcctgag
caatcttccggtgctgataaaggtggtgacggcgagtccggtaccaagtcgcgtccccga
cgcagacgccctcgtcgtagaagacgccgctag
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