Pseudodesulfovibrio profundus: DPRO_3069
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Entry
DPRO_3069 CDS
T05258
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPRO_3069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprf03019
]
DPRO_3069
03400 DNA repair and recombination proteins [BR:
pprf03400
]
DPRO_3069
Enzymes [BR:
pprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DPRO_3069
Messenger RNA biogenesis [BR:
pprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DPRO_3069
DNA repair and recombination proteins [BR:
pprf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DPRO_3069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
Helicase_C
AAA_19
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
AAA_22
AAA_11
DNA_pol_B_exo1
Motif
Other DBs
NCBI-ProteinID:
SOB59979
UniProt:
A0A2C8FC04
LinkDB
All DBs
Position
DPRO:3156629..3161746
Genome browser
AA seq
1705 aa
AA seq
DB search
MLSFDDILNSSIAVDLEIHPEGNHLLAVGAYVKRSEQHVSRNGGKLSPCEALDGLDRLAQ
EEEFIVGHNIIQHDLPYLKGMADNARIFTLPAIDTLILSPLAFPQNPYHRLVKGYKLVKD
TINNPVADSKLALGLLEMEADVFAQLPESTLQFYGYCLRATHPEHGFGAFFEAIARKPLP
SQREAEAIWMDELGTKACSNHAIEIFHEATATQDQTWKLAYIAAWIRAENGTSVLPPWVR
YAMPGITSDLNRLRSTSCNNNSCEYCTSNHDPHTALKAFFGFETFLPVKDESPPLQESIV
KVMQAGKPLLAILPTGGGKSLCYQLPALMRARQRKVMTLILSPLQSLMKDQVDGLVSKGI
ANAGMINGLLTPLERSATLESIRLGDIDILFIAPEQLRNTVVKRTLAQRELGLVVVDEAH
CLSKWGHDFRPDYLNIGPYLRNRFKDSIDDLPQVACFTATAKLDVITDIADHFREELGCE
LEIVEGGHERTNLSFEVIAVSPDQKQATIHQLLLDYFPLDENGMPPADCGSAIVFAATQN
RTKALSEFLSREGWQADYFHGGRTPDEKRQVQERFLDGELTVIAATNAFGMGVDKPDVRL
VIHVDTPGSLENYLQEAGRAGRDREQAHCVLLFSRDDLDEQFSIAADAEITRDEINGVYQ
GLKRMARNHPEETIVVTSGEILKSDDVGAAGDLSVESRGYDTKVKMIISRLERTGKLKRG
DNQANVIQGQVLAPDLQEAKKRIAQLNLQGRKREIWESLLAELLASDARELLNTDQLTSV
TGQTPQELLATLHEMRGARLINHDLNMTAFVRHGVQKSSKKCWEQELLLEKELLGFMEEQ
FPDAEVGSRAVMHMRSTAQELKDRGCDGAQPDRIRRLLSLWRRERLIDFSPRGSGHLEIR
FREEWQTVRGKSENRRAVGGVILGALLGKIPSGRRGKNILISFRTEDLTKSLSRDARFTG
LTNLERLANDALLALNHLEIINLQSGLSVFRPAMTLEINADSPQFTLAEFSFLAQFFDQK
RLQVHIMGLYAQFASQGIKRAMAMVRDYFTLTINQFLARYFKGREKEIKRPLTQESYDAI
VTDLRNKDQEKIVSAPSKGNMLVLAGPGSGKTRCIVHRIAYLLRVERIPGRKILALAFNR
SAAAQIRARLRELVGRDARFVRVYTYHALAMNLTGGSLVGKKQVAATAFDDFIGDAVNML
REESEEDYGIKTMRDRLLSGLSHILVDEYQDINSLQYDFLSLLAGRIEQDSDEKPSLMAV
GDDDQNIYAFDGSNIEFIRRFKEDYNAKEYHLTLNYRSLSPIVEVGEQLIQKNRDRMKVD
VRMRAARQGLLGSRESVVKIVYTEDRAARLKGALSLCAEVMESDKGLPLEDICILCRSNR
ELDSLLLLSQYSSVKLRALRPRPWDLTRTREFLVIKSCLEYCSEEMVRGEKLRELVNDLL
LGSGFAANNIWLTSIRLLLDQYLEESMAPRSIATFIMHLYESAREQKNNCRPEPGAVVAS
TIHTVKGLEFSSVIMPAQPVRAALGEEERRLYYVGMTRAKDKLYCLSSQDNPNPFLADVE
RLHPSTRRRFALSPKEHEAYQTQYWDMSLGDVIISFPGYLSSADRIQAALAQMEPGYSEG
LSLVMQGDRHVITFAGPTHFGPLARLSLSGEKVLQEYLSKGLEAQKVTYMASQHWNRDES
DTSTSLDSWFVGLFRVEFVPNPERQ
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcttttgacgatatcctgaattcttcgattgctgtcgatcttgaaatacatcct
gaaggcaaccaccttctggctgttggtgcgtatgtaaagcgatcagagcaacatgtttca
agaaatggggggaaactttctccctgtgaagctcttgatggccttgatcgtcttgcacaa
gaggaagaattcattgtcggccacaacataattcaacacgacttaccctatctgaaagga
atggcggataacgcgcggatttttacgttgcccgcaattgatacgttgatcctttcacct
ctcgcatttccacaaaatccatatcatcgcctggtgaagggttataagctcgtaaaggac
accatcaacaatcctgtggccgattcaaagttggctcttggcttacttgaaatggaagca
gatgtttttgcgcagcttcccgaaagtacgcttcagttttatggctattgtttgagggcc
acgcatccagaacatggctttggagctttttttgaggccattgcccgaaagccccttcca
agccagcgagaagctgaagcaatatggatggatgagttggggacgaaagcctgttccaac
catgcaattgaaatatttcacgaggcaacagccactcaagatcaaacgtggaagcttgct
tatattgctgcctggattcgtgctgagaacggtacatctgttctgcctccttgggtcagg
tacgccatgccgggtattacgtcggatttgaatcgacttcgctcgacatcctgcaacaat
aatagttgcgagtattgcacttccaatcacgatcctcatactgcgcttaaggcttttttc
ggcttcgaaacattccttcctgtcaaagatgagagccctccgcttcaggagtccattgtc
aaagttatgcaggctggcaagccactgttggccattctccctacagggggaggaaaatcc
ctttgctatcaactcccagccctcatgcgtgcccgacagcggaaagtgatgacgcttatc
ctttcacctcttcagtcactcatgaaggatcaggtggatggattggtctccaaaggcata
gccaatgcggggatgatcaatggtctgcttacgccgcttgaaagatctgccaccctggaa
tcaataaggttgggcgacatagatatccttttcatcgcgcccgagcagctgagaaatacg
gtagtaaaacgcacgctcgcacagcgggagcttggtctggttgtcgtggatgaagcgcat
tgcctttcaaagtgggggcatgatttcaggccggattatctcaatattggcccctatctt
aggaatcggttcaaggactcaatcgacgacttgccgcaagtggcttgttttacagcgact
gcaaagctggatgtcattacggatatcgctgatcacttccgggaagaactgggctgtgag
cttgaaatcgtcgaagggggacatgagcggacaaatttgagctttgaagtgatagcggtt
tcaccagatcagaagcaggccaccatacatcaactccttctcgattacttcccgttggat
gaaaacggcatgcctccggcagattgcgggagtgcaatcgtattcgctgccacacaaaac
agaaccaaagcgctcagtgaatttctttcccgggaaggatggcaggcggattacttccat
ggcgggcggactcctgatgaaaaaaggcaggtgcaggaacgatttcttgatggtgaactg
acggtcattgccgcaacaaatgcattcggcatgggggtggataaacctgatgtgcggtta
gtcattcatgtggatactcccggatctcttgagaactatcttcaggaggctggacgagcg
ggacgggatagggaacaagcccattgtgttctgcttttctctcgtgatgatcttgatgag
cagttttccattgccgcagatgccgaaataacccgagatgaaatcaacggtgtatatcag
ggactcaagcggatggcccgtaatcatccggaagagaccatagtcgtgacgtctggagag
atactcaagtcagatgatgttggtgctgccggggatctttctgttgaaagccgtgggtat
gacacgaaagtgaaaatgatcatttcccgtttggagcgaactggaaaacttaaacgtgga
gataaccaggcaaacgtcatacaggggcaggttctggctcctgatttgcaggaagccaag
aaacgcattgctcagcttaacctccaaggtagaaaacgtgaaatttgggagtccctgctc
gcggaacttttggcatcagatgcgcgggaattgctcaacaccgatcaactgacttcagtt
acaggccaaactccacaagagctcttggcgacgttgcacgaaatgcggggcgcacgcctt
atcaaccacgacctgaacatgacggcgtttgttcggcatggtgttcagaagagttcaaaa
aaatgctgggagcaagagctacttctcgaaaaggaactgcttggcttcatggaagagcag
ttccctgatgctgaagtgggcagtcgagctgtcatgcatatgagaagcaccgctcaggag
ctgaaggatagagggtgtgacggagcgcagccggataggatacgcagactgctctcttta
tggagacgtgagcggttgattgatttttcccccaggggaagtgggcatctcgaaatacga
ttcagggaggagtggcaaacagttcggggaaaatccgaaaatcgtcgggccgttggtggt
gttatacttggtgcactcttaggaaaaatcccgtcagggcgtcgggggaaaaacattttg
atatcgttcaggacagaggatttgacgaaatctctgtcgcgtgatgctcgttttacaggg
cttacgaatttggagcgtttggcgaatgacgcattgttggccctgaaccatctggagatc
ataaacctgcaaagtggcctctctgttttccgccctgctatgactttggaaattaatgcg
gacagcccgcaatttacgttggcggagttctcgttcctggctcaatttttcgaccagaaa
cggctgcaagtccacatcatgggcctatatgcccagtttgcttctcaagggataaaacgt
gcaatggcaatggtcagagactactttacgctgactattaatcagttcctggcacgatac
ttcaaagggcgggagaaggagatcaaacgccccctgacgcaggaaagctacgatgcaatc
gtaacagatttgcgcaacaaggatcaggagaagattgtctcggcccccagcaaagggaat
atgctggtcctggctgggccaggttctgggaaaactcgctgtattgtccatcggattgcc
tacctgcttcgtgttgaacgtataccgggcaggaagatactggcactggctttcaaccga
agtgccgctgcacagattcgagcaagattgcgggagttggtcgggcgggacgcacgtttt
gtccgagtgtatacttatcacgctttggcaatgaaccttacgggtggctccttggtgggg
aaaaagcaggttgcggcaacagcctttgatgattttatcggcgatgcggtgaatatgctc
cgggaggagtctgaagaggattacggcatcaagactatgcgagacaggttgttgtcaggt
ttgtcgcatatacttgttgatgagtaccaggatatcaattcccttcaatacgattttctc
tcgcttctcgccggtcgaatagagcaagactcggacgagaagccttcccttatggccgtt
ggagacgacgatcagaatatctatgcctttgatggttcaaatatcgagttcatccgtagg
ttcaaagaagactataatgccaaagagtatcatctcactttgaactaccgcagtctgtct
cccattgtagaggttggcgaacagctcattcagaaaaatagggatagaatgaaggtcgat
gtccgtatgcgtgctgcacgccagggactgttgggtagcagagagtccgttgttaaaatt
gtatacactgaagacagggcggctcgtctcaaaggcgctttgtcgctttgcgctgaggtg
atggaatctgacaagggtttgccgcttgaagatatctgtatcctttgccgttcaaaccgg
gaactcgacagtttgcttcttctttctcagtacagcagcgtgaagcttcgcgcacttcga
ccgcgcccctgggacttgacgcggacaagagaatttctcgtgatcaaatcttgtctggag
tattgttcggaagaaatggtgcgaggggagaagttgcgagaattggtcaacgatctgctg
ttgggaagtggattcgcagcaaacaatatctggctgacttccattcggcttttgttggat
cagtacttggaagaaagtatggccccacggtcaatcgctactttcataatgcatctgtac
gagtctgcgcgggagcaaaaaaataattgtcgcccggagccgggagcggttgtcgcctcg
actattcacacagtgaaagggttggagttttcttcggtcataatgcctgcccagcctgtc
cgggccgcattgggagaggaggagcggagactctattacgtgggcatgactcgggccaaa
gacaaactctattgcctgtcgagccaggataatcctaatccgtttttggctgatgttgag
aggcttcatccatcaacgaggcggcgttttgctttatcgccaaaagaacatgaggcgtat
cagacacagtattgggatatgagtctaggcgatgtaataatttcttttccgggctatctc
tcctcagcggatcgaattcaagctgccttggctcaaatggagccgggatatagcgagggc
ctctcccttgtcatgcaaggcgacagacacgtcattacatttgccgggccaacgcatttc
ggcccccttgcacggctttcattgtccggagaaaaggttttgcaagaatatctcagcaaa
ggtcttgaggcccagaaagtgacgtacatggcgtcacaacactggaatcgggatgagagt
gacacttcgacttcgctcgattcttggtttgttggtttgtttagggttgaatttgttccc
aatcctgagcggcagtag
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integrated database retrieval system
