Pseudodesulfovibrio profundus: DPRO_3797
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Entry
DPRO_3797 CDS
T05258
Name
(GenBank) Ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pprf
Pseudodesulfovibrio profundus
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pprf03016
]
DPRO_3797
Enzymes [BR:
pprf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DPRO_3797
Transfer RNA biogenesis [BR:
pprf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DPRO_3797
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
SOB60714
UniProt:
A0A2C8FE59
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All DBs
Position
DPRO:complement(3935534..3937588)
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AA seq
684 aa
AA seq
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MAKKTILGPTIRPGTVVEFMHGDQPQLAWVLEDISGKLRIITINKREMKLPAARLLPWHG
PVLNAEANRQEIQDILNSHQERRGEIQASLDVMELWDLSQGELESAPLTWFADLLWEEPD
ADQLAALGRGMLNAKTHFKFRPPNFEIWSAEQVELKLQQKAEEKAREAITSAGQVLLQEL
WSAFNQGRKPNPPAIDDELSKSLAGILRRKVGDTLDENERKIWTAISKGLPDTPHIALLL
SQTWGILPPHHNYLLDEAEYEWGNEWSESFSSEISELETRLSNHQHEIESEDFVSIDAIT
TKDIDDAFRIESTSNGYKVSIALARPNIHWEFGSPLDRAVFNRATSLYLPEGDTHMLPEQ
LGTGLYSLLAGEDRPALITDFELDSSGNLLSVSPRQAWIRVAANITYESAQQAILDKSDA
SLVLAHELAEKLMARRIEAGACVIRKPEPVVKVEGEGAQSSITIELKESSPYSELVVSEF
MILANAGLALWAADNTIPLLHRTQDIALPQESAGIFTEPAEILRAVRLLLPPILETTPKR
HAALAVPAYAPITSPLRRYTDFINMEQVCSYLTDGTPRLSLEELDKLATSLGLRIKTVST
VQRFRPRYWKLVYLAKRRKQLQSAVLVDDNGPMATLAMPHLQVNVRAPKKLLGDKLYPGQ
QFQINFSRIDPLTNEIRIAEALEE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaaaacgattctcggccccactatccgtcccggaactgttgtggaattcatg
cacggcgaccaacctcagcttgcctgggtgctggaagatatctccggcaaactccgcata
ataaccatcaacaagcgtgagatgaaactccccgcagcccgcctgctgccttggcatggg
cccgttctcaacgcagaggccaaccgtcaggaaatacaggacatcctgaattctcatcag
gaaagacgcggtgaaatccaggccagtctggatgtcatggagctgtgggacctctctcag
ggagagctggaatccgcgccattgacatggtttgccgatctactgtgggaagagcctgac
gcagaccagttggccgcactgggacgtggcatgctcaacgccaagacacatttcaaattc
cgcccgcccaatttcgagatatggtccgctgaacaggtggaactgaagctccaacagaag
gccgaagaaaaagctcgcgaagcgatcacatccgccggtcaggttttgctgcaggaacta
tggtccgccttcaatcagggccgcaagcccaatcctccggcaatcgacgacgagttatcc
aaaagcctggcaggcattctgcgacgtaaagtcggcgatacactcgatgaaaatgaacgt
aaaatttggacagccataagcaagggattgcccgacacaccgcatattgctctccttctt
tcacagacatggggcattcttcctccacatcacaactaccttcttgatgaagctgagtat
gaatggggaaacgaatggtctgaatcgttctctagtgaaatcagtgaattggaaacacga
ctttctaatcaccagcatgaaatcgaaagtgaagactttgtcagcatcgatgccatcacg
accaaagatatagatgacgccttccggattgaatcgacttcgaatgggtacaaggtatcc
attgcccttgcccgtccaaatattcactgggagtttggctctcctctggatcgagcggtc
ttcaatcgcgccacatcgctctaccttcctgaaggcgatacccacatgcttcccgagcaa
ctgggaaccgggttgtacagcctgctggccggagaggatcgccctgcgctgattaccgat
tttgagcttgattcatcaggcaatctgctgtcagtctcgccccgtcaggcatggatacgc
gttgctgccaacattacctacgagagcgcgcagcaagccatcctcgacaagagcgacgcg
tccctcgtgcttgcccatgagctggcagaaaagctcatggctcgtcgcattgaggccgga
gcctgtgttatccgaaagcccgagccggtggtcaaagtcgaaggtgaaggtgcgcaatca
tccatcaccatagaactgaaagagtcgtccccctactcggagttggttgtcagtgaattc
atgattctcgccaatgccggcttggctctgtgggccgcggacaatacaataccactgctt
catcgcacgcaggatattgccctgccgcaggaatctgctggaatctttacggagcctgcc
gagatactccgggctgtccgtcttctgcttccgccgattctggagaccacacccaaacgc
catgcagcactggccgttccagcatatgcacccattacctctccattgcggcgctacacc
gacttcatcaacatggagcaggtttgctcctacctgacagacggcaccccccgattgtcg
cttgaggagttggacaagctcgcgaccagtctcggcctgcgcatcaaaaccgtcagtacg
gttcagcgtttcagaccgcgatactggaagctggtgtacctcgccaaaagacgcaagcag
ttgcagtctgccgtccttgtagatgataatggccccatggcaacccttgccatgccgcat
ctgcaggtgaatgttcgtgcgccgaaaaaactgctgggtgacaagctctaccccggtcag
caatttcaaatcaacttttcgcgcatcgatccattaaccaatgagattcgtatagccgag
gctctcgaagagtag
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