Pseudodesulfovibrio profundus: DPRO_3958
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Entry
DPRO_3958 CDS
T05258
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DPRO_3958 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprf03021
]
DPRO_3958 (rpoC)
03400 DNA repair and recombination proteins [BR:
pprf03400
]
DPRO_3958 (rpoC)
Enzymes [BR:
pprf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DPRO_3958 (rpoC)
Transcription machinery [BR:
pprf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DPRO_3958 (rpoC)
DNA repair and recombination proteins [BR:
pprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DPRO_3958 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
SOB60877
UniProt:
A0A2C8FDM2
LinkDB
All DBs
Position
DPRO:4109850..4113998
Genome browser
AA seq
1382 aa
AA seq
DB search
MTLDDLFTLRGAPNQAAQGRNLKAIQISIAAPETIREWSFGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDITMADLEKVLYFDSFIVLDPGETPLKTHQVVSEDQYFQVIDHFGED
ALEVGMGAETVRTMLEALDLPTLRTELREEAATTRSQTKKKKITKRLKIVEAFLESGNRP
EWMIMEVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYAELEKRDIATTIKSAKKMVEREDLVVWDILED
VVREYPIMLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSTNNILSPSNGSPIINPSQDIVLGLYYLTTPRSFDKGEGMVFSDPAEVI
AAYDHGAVGLHARIKVRINGKIEETTTGRVIVSELIPSEVPFDMVNCVLNKKNIAALVTG
AYRQAGTKATVILCDRIKDLGYEFATRAGVTIGVKDLRIPDAKAGMLDTAHAEVDEIENQ
FQDGIITRTEKYNKVVDVWTKVTNEISNEMMQEVSTDILTDPKTGKTEVNSSFNPIYMMA
TSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITASFREGLSVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVTVSELDCGTVDGLELTHLIKGGEIKQRLAERVHGRVTMF
DIYNEDNGELIIPSNTVIDSEYAKKLDQSGVNSITIRSGLTCKSKQGICAMCYGRDLARG
HLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTASKEIESSAIESQHNGRVVTSRMRTV
VNSEGHKMVLGKSCQVGIVDDQGREREKYVLPSGARLLVEDGQDIKKGTPLADWDPYMEP
FIVDVSGTIKFKDIIEGKTVQEDRTSKASYTIMEYRTTNYRPSVGIFDEEDNAVCRPGTD
IAANFAMPVGAILMIKDGDTVKAGDVIARKPRESSKTKDIVGGLPRVAELFEVRKPKDMG
VVSSIDGIVTFGPETKGKRKVVVTPEIGDAKEFLIPKGKHITVQESDFVEAGDLLTEGSP
ELHDILRIKGEKHLARYLVEEIQDVYRFQGVNINDKHIEIIVRQMLKKVSILEPGSTSFL
IGEQVDKLRFMEENNKVLAEGGKPAVAETLVLGITQASLSTDSFISAASFQETTKVLTEA
SLKGKSDNLRGLKENVIVGRLVPAGTGFRKYTDSGIIVPDQTERPDKFLEELEESPLLVE
SE
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggacgatctgttcaccttgcgtggagcgccgaatcaggcggcccaaggccgt
aacttaaaggctatccagatatccattgccgcacctgaaaccattcgcgaatggtctttc
ggtgaggtgaagaaacccgaaaccatcaactaccgtaccttcaaaccggaacgtgatggc
ctcttttgtgccaagattttcggcccggtgaaggattacgagtgcaactgcggtaagtac
aaacgcatgaagcaccgtggtatcgtgtgtgaaaaatgcggcgtcgaggtcattgcctcc
aaagtacgtcgtgaacgcatgggccacatcgagcttgctgctcctgttgcgcacatttgg
tttctgaaaaccctgccttcgaagatcggtacactcctggatattaccatggccgatctc
gagaaggttttgtacttcgattccttcatcgttcttgatccgggcgaaaccccgctcaag
acgcaccaggtcgtttccgaggaccagtatttccaggtcatcgatcactttggtgaggac
gctctcgaagtcggtatgggcgctgaaaccgttcgtaccatgctggaagcattggatctg
ccgactcttcgcactgaattgcgtgaagaggcagcaaccactcgctctcagaccaaaaag
aagaaaatcaccaaacgccttaagatcgttgaagcgtttttggagtctggcaacaggccc
gagtggatgatcatggaagttattcccatcattccgcccgagctgcgtcctctcgtccct
ctggacggtggccgtttcgccacatccgacctcaacgacctgtaccgacgtgttatcaac
cgtaacaaccgtctgaagcgtctgctcgagctcggtgcccccgagatcatcatccgcaac
gaaaagcgtatgctgcaggaagctgttgacgccttgtttgacaacggtcgccgtggtcgt
gccattaccggcaccaatggtcgtccgctgaaatccttgtccgacatgatcaagggtaag
caggggcgtttccgtcagaaccttctcggtaaacgtgtcgactattccggtcgttccgtt
attgttgtcggtccgaagctgaaactgcaccagtgcggtcttcccaagaagatggctctg
gagcttttcaagccattcatctacgccgagttggaaaagcgtgacatcgccacgaccatc
aaatctgcaaagaagatggtagaacgcgaagatctggtcgtgtgggacatccttgaagat
gtagttcgcgaatacccgatcatgctcaaccgtgcaccgactctgcaccgcctcggtatc
caggcatttgaaccgcttctcgtagaaggtaaagctatccagctgcacccgctcgtctgt
tccgcttacaacgctgacttcgatggtgaccagatggctgttcacgttccgttgtctgtt
gaggcgcagatcgagtgccgtgtactcatgatgtctacaaacaacatcttgagcccttca
aacggatctcccatcatcaatccttcgcaggatatcgttcttggtctgtactacctgacc
acgccgcgatccttcgacaagggtgagggtatggtcttttctgatcctgctgaagttatt
gcagcttacgatcatggcgctgttggtctgcatgctcgaatcaaagtccgtatcaacggc
aagatcgaggagaccaccaccggtcgcgttatcgtcagcgagcttattccgagcgaagtg
ccgttcgatatggtcaactgcgttctgaataagaagaacatcgctgcactggtaaccggt
gcatatcgtcaggctggaacaaaggccactgttatcctttgtgaccgcatcaaagatctg
ggatatgaattcgctactcgcgccggtgttaccattggtgtgaaggatttgagaatccct
gatgccaaggctggcatgcttgatactgctcacgctgaagtggacgaaatcgaaaaccag
ttccaggacggtatcattacccgtactgagaaatacaacaaggttgttgacgtctggacc
aaggtcaccaatgagatctccaatgagatgatgcaggaagtgtctaccgacatccttacc
gatcccaaaaccggtaagacggaagtcaactccagctttaacccgatctacatgatggcc
acttccggcgctcgtggtaaccaggatcagatgcgccagcttgctggtatgcgtggtctg
atggccaagccgtcgggtgagattattgagactcccattaccgcttccttccgtgaaggt
ctgtcggttctgcagtactttatctccactcacggtgctcgtaagggtctggctgatacc
gcactgaaaactgcaaactccggttacctgactcgacgtcttgtcgacgttgttcaggat
gtaaccgtatctgaactcgattgcggcactgtcgatggccttgagcttacccaccttatc
aagggtggtgagatcaagcagcgtctggcagaacgtgtccacggtcgtgtgacgatgttt
gatatatataatgaagataatggtgagctgattatccccagcaacactgtgatcgattcc
gaatatgcgaagaaacttgaccagtccggcgtgaactccatcacgattcgctccggtttg
acctgtaagtccaagcagggcatttgtgccatgtgttacggacgtgacctcgctcgcggt
catctggtcaacgttggtgagactgtcggtattatcgctgctcagtccattggtgagcct
ggaacccagcttaccatgcgtaccttccacatcggtggtaccgcatccaaggaaattgaa
tcgtctgccattgaatcccagcacaacggtcgcgttgtcacctctcgtatgcggactgtt
gtcaactccgaagggcacaagatggtccttggtaagagttgtcaggtcggtatcgtggat
gaccagggacgtgaaagggaaaaatacgtcctgccttccggtgccagattgctggtcgaa
gacggacaggatatcaagaagggtacaccgcttgccgattgggatccgtatatggagccc
ttcatcgttgatgtttccggtacgattaagttcaaggacatcatcgaaggcaagactgtg
caggaagaccgtacatcaaaggcttcctacaccatcatggaataccggaccacgaactat
cgtccttctgtcggtatcttcgacgaagaggataatgcagtttgtcgtcctggtactgac
attgcggcgaacttcgctatgcctgtcggcgctattctgatgatcaaggatggcgacacg
gttaaggccggtgacgttatcgcacgtaagccgcgtgagtcttccaagaccaaggatatc
gttggtggtttgccgcgcgttgcagagctcttcgaggttcgcaagcccaaggatatgggt
gttgtttcctccatcgatggtattgtcacattcggccctgaaacgaagggtaagcgtaag
gtcgtagttactcctgagattggtgacgccaaggaattcctgattccgaaaggtaaacac
atcactgtacaggagtccgacttcgttgaagccggcgatctgctgaccgaaggctcccct
gagctgcacgatatcctgcgtatcaagggtgaaaaacaccttgctcgttacctcgttgaa
gaaatccaggatgtttaccgcttccagggtgttaacatcaacgataagcacatcgagatt
atcgtccgccagatgctgaagaaggtttccatccttgaacctggttccacctctttcctt
attggcgagcaggtcgacaagctgaggttcatggaagagaataacaaggttctggctgaa
ggtggtaagcccgctgttgccgagacacttgttctcggtatcactcaggcttcactgtct
actgactccttcatctcggctgcttccttccaggaaaccaccaaggttctgactgaagct
tctctgaagggtaagtctgataacctccgtggactcaaggaaaacgtaattgtcggtcgt
cttgttccggctggaacaggattccgtaaatacaccgattccggtattatcgtaccagac
cagactgagcgtcctgacaagttcctcgaagaattagaggaaagtccgcttttggttgaa
tcggaataa
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integrated database retrieval system
