Pseudodesulfovibrio profundus: DPRO_3989
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Entry
DPRO_3989 CDS
T05258
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pprf
Pseudodesulfovibrio profundus
Pathway
pprf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pprf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DPRO_3989 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprf03021
]
DPRO_3989 (rpoA)
03400 DNA repair and recombination proteins [BR:
pprf03400
]
DPRO_3989 (rpoA)
Enzymes [BR:
pprf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DPRO_3989 (rpoA)
Transcription machinery [BR:
pprf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DPRO_3989 (rpoA)
DNA repair and recombination proteins [BR:
pprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DPRO_3989 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
SOB60908
UniProt:
A0A2C8FEM8
LinkDB
All DBs
Position
DPRO:4130003..4131043
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AA seq
346 aa
AA seq
DB search
MLIENGDKLINTRNWSELVKPEKLTRDPKSGENYGKFICEPLERGYATTIGNAMRRVLLS
SMQGCAIVAASIEGVQHEFTTLPGVLEDMTEVVLNLKQVRIAMTTDEPQRLVLEANKKGP
VKASMIQENQNAKVLNSDQLIATLTEDRPFKMEIEVRMGKGYVPADMHEGLTDEIGSMIL
DASYSPVKKVAYSVEQARVGQMTNYDKLILEVWTDGSVTPEDACAYSAKILKDQLSVFIN
FDELSSEAQEEEEDSIDLNPNLFKSIDELELSVRATNCLKAANIQLVGELVQRTEQAMLK
TKNFGRKSLDEIRRVLDGMQLKFGMTVEDFDKKYQEWLKRKEKNEA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgcttattgagaacggcgacaaattaatcaacacccgcaactggagtgaactggtcaaa
cctgaaaagctcacccgtgacccaaagtccggtgagaattacggcaagttcatctgtgaa
ccccttgagcgcggttatgctactaccattggtaatgccatgcgccgggtccttctgtcc
tctatgcaggggtgtgccattgttgccgcctctattgagggcgtgcagcatgagttcacc
acacttcctggtgtgctcgaagatatgactgaggtcgtattgaacctgaagcaggttcgt
atagctatgaccactgatgagcctcagcggttggttctcgaagccaacaaaaaaggcccg
gtcaaagcgagcatgattcaggagaatcagaatgcaaaggttctgaactccgatcagctt
attgccactctcactgaagatcgtccgttcaaaatggagatcgaagtgcgcatgggcaag
ggttacgtccccgctgacatgcatgaaggtttgaccgatgagatcggttccatgatcctt
gatgcgagctactctcctgtaaagaaggtagcttactctgtggagcaggctcgtgtcggt
cagatgacgaactatgataaactcatccttgaagtctggaccgacggttccgtgactcct
gaggatgcctgtgcatacagtgccaagatcctgaaagatcaactctctgtgttcattaac
ttcgatgagctgtcttccgaagcccaagaggaagaagaagattccatcgatctgaacccc
aatctcttcaagtccattgatgagctcgaactctctgttcgagcaaccaattgcttgaag
gctgccaacattcagttggtgggagagttggtacagcgtacagaacaggccatgctgaag
accaagaacttcggtcgtaagtctcttgatgagattcgtcgagtcttggatggaatgcag
cttaagttcggtatgaccgttgaggattttgacaagaaataccaggaatggttgaagagg
aaagagaaaaatgaggcatag
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