Poeciliopsis prolifica (blackstripe livebearer): 129364923
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Entry
129364923 CDS
T09758
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprl03036
]
129364923 (smchd1)
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129364923 (smchd1)
Chromosome and associated proteins [BR:
pprl03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
129364923 (smchd1)
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
129364923 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
APG6_N
HATPase_c
Psb28
Polbeta
bZIP_Maf
Motif
Other DBs
NCBI-GeneID:
129364923
NCBI-ProteinID:
XP_054893848
LinkDB
All DBs
Position
Unknown
AA seq
1946 aa
AA seq
DB search
MINVYNYLPNYQQGLKKTLKLGLELDDFLRLVHREFGLPPWQKFCLVTTDRTVVDHAKFK
ELQDDSTLYLLQSEDQDLPVAAKEVINFVPHYNTLIESGTFEYFAEGQESLSCSLAELVD
NSLSATAKNTGVRTIEIRLLFDKTFGKSAVVVLDNGCGMTSKQLNNWAVYRLSKFTRENS
RFESERENYARPEPVPRSLNSDISYFGVGGKQAAFHIGTSVRMISKPRNSPDVHELVLSK
DEFQKKEKNKEDVYKGTILNRKPGDFSHITHEESYLQDIIKEETRKESFTAVVITGVCPG
HIDYLKDCFHEWTRQLAHIYHYYIHGVNGNHKMDQSQKSNIDILVTLREKPPKGLRQKNL
REVQDDLQTLYINSAVDTFEFKAETSDDGCLDGILRYHPFLYDKETYPKDPKTLQAAVEE
DDDENPSGIMNQARGKRDIFECFWNGRLIPYTTVSEFDWCCRPSRSTLPLECFSRFSGVL
FTNDKFRVNASKQKFMDLELKLKHKDAHFTPVFNVQKASKNRSIQKEFIQWLEKCHSQFD
KQVKFIGYQGPVKRTGVSIKKLSDWAVFSTIELDGKRYKAGDLVKSQKTQPIYYGKVNQF
YLHGDHKGDVFATGGEVEITRVPETLYDNYTRAIPISKIDRSATIETIKNCIEIDIDKLP
AKLSISWPKGNALPQNAVIPAGTPLGPLAVEILNRKEKSISSRINTGGQGGGIKLNVGLR
IFFHGPKEVKQPKQISYFSAPYITGHGHWFNKNVSLTDLGKYTLALKAELSENKKTSYGG
RELPSYEHKFTVKEGNAENFTFGPLTTSLRIGVPFSIPMQMTDSYGHPTKPPPNLQPVVE
CSDLAVSFETTSASGNSFTIQGVKVIGKLQNYQHSRRFDLKVTLPGLKKQTQFVKISPFP
GNPHSLLVKPEVKPVKVENGNPVSFAVEVLDEAGNITANAKQIVRCQIPGLKLAVTDCSS
TGTGQIVTEPVNLKIINGEPQMLQAKFEMPSQKHIAAITTELKVMPSSRVSRMELFCEGE
ERLELKYEEKIQWQAGGVLENLLFKLYDESGKEVKVTPEIASSIKVNWTGDIDQRALIMG
RLPDIQVSTKVQEERFHQVSYRDHSVSFSFTIVPYPDEPARLKAIVPENTVKLGETVTGP
IKLMFVDQYDNVTNRLTSDCVTSMAVEAEGLDKSNIAFLWEESSSSVAVSGIRFNSGPLG
TRDVCFTYGNYTEHINFKVTAGIPTKLKLLSGPEMPLQILNGTGISTPFVVQLCDEWGNP
SPDQRVVVETRTTPSTVKVTTSVTSQPADAEGKAAFTVVYVKGSKGYYQLEFVGCFNRKP
IPGPHVNFSIIPDPNKPVTLSVNYDTSARFLAGGTFPVFSVAVVSDAGSEMTTFKSADLS
MWCWKGESLTRPESATRLVCSKPMENDNKCCYYFRDKKIPPSVGTYTIQFSLRVENTEVL
FSNQIIVNVVANQPVKLGPECQPQTSVVYYSRDIANRTLVENMTLKIMDQHGNPTGQNLN
GKVSVSIKCADGEQSRNLPLLEGVGTLQINLKDGSTHINRLAIRENSPGENGRRYILIFK
PEVVIPPTSLGPFELPFHFYNDFDNQQKVSGLTKKKHELTVHVEKLNETHSSLVRLRELL
TRSVLDSNIKEEALKKVLKESRIPALQLSSIQNIDSLLQEKTAEKERIERTPRRAFPSSN
CSGPDILGKVGHLAHISDEDAAWVISWHLSSEMDCVITKTTAEAQRIFRDEHGRQQIMAL
DSINVHQGSRPLPHMKQGRELFSPVGNPVCARNLLIYTTEEESCELVFKTILGNTILMDD
IESATNYRKAVIQKGNYCPTILTRDGNRLLFSGKFGGAQNKAPKRHIVKMFGAPLPLRYD
TLQKEIDLLIQYRSTLEKKKIEEDKRHKTIQKLHEIEQEVEETEKELEEIEKQLASVRSG
KRGPEDISEPSGLMMKRPRGRSRDTP
NT seq
5841 nt
NT seq
+upstream
nt +downstream
nt
atgattaatgtgtacaactacctacccaactaccagcagggtttgaagaagactctgaaa
ctcggtttggaactagacgactttcttcgacttgtacacagggaatttggccttcctcca
tggcaaaaattttgtttggtgacaacagacagaacagttgttgatcatgccaaatttaag
gagcttcaggatgacagcaccctctacttgttgcaaagcgaggaccaagaccttccagtg
gccgctaaggaggttatcaactttgttcctcattacaacacgctaatcgagagcggaaca
tttgaatactttgccgagggccaggaatcactgtcctgctctctcgctgagctggtggac
aactctctttcggctacagctaagaacacaggagtcaggacgatagagatccggctgctt
tttgacaaaacatttgggaagtctgctgtcgtggtgttggacaatggatgcgggatgacc
tccaagcagctcaataactgggctgtttacagactctctaagttcacaagggaaaacagc
agatttgaaagtgaaagagaaaattacgctcgtcctgaacctgtacctcgcagtctcaac
agtgatatatcctactttggagttgggggcaaacaagcagctttccatattggaacctca
gtcagaatgatcagcaaaccaagaaactctccagatgttcatgagctggttctatcaaag
gacgaatttcagaaaaaagagaagaataaggaggatgtttacaaagggaccatcttaaac
aggaagcctggtgacttctcgcacataacacacgaggagtcctaccttcaagacatcatc
aaggaggaaaccaggaaggaaagcttcactgctgttgttataacaggagtctgtcctggt
cacatcgactatctaaaagattgttttcacgagtggaccagacagctagcgcacatttat
cattattacattcatggagtcaatggaaaccacaaaatggaccagtcccaaaaatcaaat
attgatattctggttactttgcgggagaaaccgcctaaaggtttgcgtcagaagaatctc
agagaagtgcaggatgacttgcagaccctgtacataaactcagctgtagacacatttgag
ttcaaggccgaaacttctgacgacggctgcttggatggaatcctgagatatcatccattt
ctttacgacaaggagacctaccccaaagatccgaaaactcttcaagcagctgttgaggaa
gatgatgatgaaaatccgtctggaatcatgaatcaggccagagggaagagggacatcttt
gagtgtttctggaatggacgactcattccttacaccacagtttcagagttcgattggtgc
tgtcggcccagtagaagtacattgcccctggagtgtttcagccgcttttctggggtgctt
ttcaccaacgacaaattccgggtcaatgcaagcaaacagaagtttatggacctggagctg
aaactgaagcacaaggatgcccattttaccccagtttttaatgttcagaaagcctcaaaa
aatcgaagcatccagaaagagttcatccagtggcttgaaaaatgtcacagtcagtttgat
aagcaggtaaagttcattggctatcaaggacctgtgaaaagaaccggtgtgtccattaag
aagctgtctgactgggccgtgttctccactatcgaattggatggcaaaagatacaaagca
ggggatcttgtgaaatctcagaaaactcagccgatttattatggcaaagtgaatcaattt
tacctgcatggagaccataaaggagatgtgtttgccactggtggagaagtggaaatcact
cgtgtcccagaaaccctgtatgacaattacaccagggctattcccatctccaagattgac
cggtctgctacaatagaaaccattaagaattgcattgagatcgacattgacaagttgcca
gcaaagctgagcatctcgtggcctaaagggaatgctttgccacaaaatgctgttattcct
gcagggactcctttagggcccttagctgtggaaattctcaatagaaaggagaaatcgatc
tcatccaggattaacacagggggtcaaggtggagggataaaactgaatgttggactcaga
atattctttcatggtcccaaagaagtcaaacaacccaaacagatttcttatttcagtgcc
ccatatataactggtcatggacactggttcaataaaaatgtatccctgaccgatctgggg
aagtacacactggcactaaaagctgagttaagtgagaacaaaaagacgtcctatggcggc
agagagcttccgagctacgagcacaagttcactgtcaaagagggaaatgcagagaacttt
acttttggtccactgaccacctctctgcgcatcggagtcccattcagcattcccatgcag
atgactgattcttatggccaccccacaaaacctccaccaaatctccagcctgttgttgaa
tgcagtgacttggcagtgagttttgagacaacgagcgccagtgggaacagctttaccatc
caaggtgtcaaagtcataggaaaactccagaattaccaacattccaggcgctttgatctg
aaagtaacactgccagggttgaaaaaacaaacacagtttgtcaagatcagtccctttcct
ggcaatccacattcccttcttgtaaaaccggaagtaaaaccagtgaaagtggaaaatgga
aacccagttagttttgctgttgaagttctcgatgaggctggaaacatcacagccaacgct
aaacagatagttcgctgccagattccagggcttaagttggcggtgacagactgcagcagc
acaggaaccggccagattgtgacagagcctgtaaacctgaaaattattaatggagagcca
caaatgctgcaagctaaatttgagatgcctagtcagaaacatattgcagccatcacaaca
gagctgaaagtcatgccgagcagtcgagtctcccggatggagcttttctgtgagggtgag
gaaaggctggagctgaagtatgaggaaaagatacagtggcaagctggaggggtgctggaa
aacctcctttttaagctctatgatgagtctggcaaggaggtcaaggtcactcctgaaata
gcctccagcataaaggttaactggacaggagacatcgatcagagagctttgataatggga
aggctgccagatattcaagtttccacaaaagtccaggaggaacgattccaccaggtctcc
taccgggaccacagtgtgtctttcagctttaccattgtgccttatccagatgaaccagcg
cgactgaaggcaattgttcctgagaacacggtgaaactcggtgaaaccgtcactggaccc
ataaagttgatgtttgtggaccagtacgacaatgtcaccaataggttgacctctgattgt
gtgacgtcaatggctgtggaagctgagggtctcgataaatcgaacattgcattcttatgg
gaggagagcagcagttctgttgcagtctctggaattcgcttcaactcggggcctctgggg
accagagacgtttgcttcacctatggcaactacacagaacatatcaactttaaagtgacg
gctggaattcccaccaagcttaaactcctcagtgggcctgagatgcctttgcagatcttg
aatggtacaggcatttccacgccattcgtcgtgcagttgtgtgatgagtggggaaaccct
tccccagaccagagagtggtggtggagacaagaactacaccctcaacagtaaaggtgacg
acatctgtcacttctcaacctgcggatgcagaaggaaaagcagcctttacagttgtttat
gtgaaagggtcaaagggatactatcaactcgaatttgtagggtgctttaacaggaaaccc
atccctggtccacatgtgaacttcagtatcatccctgatcccaacaaacccgtcacactt
tcagtaaactatgacaccagtgccaggtttctagctggaggcacattccctgttttctct
gtggccgtggtgtctgatgcagggagtgaaatgacaacttttaagtctgctgatttgtcc
atgtggtgttggaagggagagtcattgacacgtccagaatcagccactcggctggtgtgc
agtaaaccaatggagaatgacaacaaatgctgttattattttagggataaaaaaatccca
ccaagtgttgggacatacaccatacagttttccctgcgggttgaaaacacagaagtccta
ttcagtaatcagatcattgtaaatgttgtggctaatcaacctgtcaagctaggacctgaa
tgtcagccacaaacctcagttgtttactacagcagagacatcgccaaccgaactttagtt
gagaacatgactctgaagattatggatcagcatggtaatccaactgggcagaacctgaac
ggcaaggtgtcggtctccataaagtgtgctgatggggagcaaagcagaaatctccctctg
cttgaaggggtcggcactcttcaaataaacctaaaagatggaagcacccacatcaacagg
ctggcgatcagggagaacagtcctggagagaacggaagaagatacattctcattttcaaa
ccagaagtggtgatacctcctacatctctgggtccttttgaacttcccttccatttttac
aacgattttgacaaccaacaaaaagtgtctggactgacgaagaaaaagcatgagttgacc
gttcatgttgagaaactcaacgaaacacattcctcgcttgtcagacttcgtgaattgctt
actagaagtgtcctggattccaacataaaagaggaagccctcaaaaaagtgctgaaagaa
agcagaataccagctttgcaactttcatctatccaaaatatagacagcttactccaagaa
aagacagctgaaaaggaaaggatagagaggactcccaggagagcgtttccttcgtctaac
tgcagtggaccagatatccttgggaaggtgggccaccttgcacatattagcgatgaggac
gctgcctgggtcatctcttggcacctgtcttcagaaatggactgcgtcatcaccaagacg
acagcagaagctcagaggatcttccgtgacgaacacggcaggcagcagatcatggccctc
gacagcattaatgtgcatcaaggaagcagacctctacctcacatgaaacaaggtagagaa
ctgttcagtccagttgggaacccagtctgcgcgaggaacttgctgatttataccactgaa
gaggagagctgtgagcttgtgtttaaaaccatccttggtaacacgattctgatggatgac
atagagtctgctaccaattacaggaaggcggttattcagaaagggaactattgtcccacc
atattgacccgagacgggaacagactcctcttcagtggaaagtttgggggcgcacagaac
aaggcaccaaaaaggcacatagtgaagatgtttggagcccctcttcctctacgctatgac
acattgcagaaggagatagacttgctcattcaatatcgttcaactttggagaagaagaaa
attgaggaagataagcgtcataagacgatacagaaacttcatgaaattgaacaagaagtg
gaggaaactgagaaagagcttgaggagattgaaaagcagcttgcatcagtgagatcaggg
aaacgaggtcctgaagacatttcagagccatctggcctcatgatgaaacgcccaagagga
agatccagggatactccatag
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