Poeciliopsis prolifica (blackstripe livebearer): 129375324
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Entry
129375324 CDS
T09758
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl04115
p53 signaling pathway
pprl04145
Phagosome
pprl04148
Efferocytosis
pprl04350
TGF-beta signaling pathway
pprl04510
Focal adhesion
pprl04512
ECM-receptor interaction
pprl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
129375324 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129375324 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
129375324 (thbs1b)
04148 Efferocytosis
129375324 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
129375324 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
129375324 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129375324 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pprl04131
]
129375324 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprl00536
]
129375324 (thbs1b)
Membrane trafficking [BR:
pprl04131
]
Endocytosis
Phagocytosis
Opsonins
129375324 (thbs1b)
Glycosaminoglycan binding proteins [BR:
pprl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129375324 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
TSP1_ADAMTS
EGF
cEGF
Laminin_G_3
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
129375324
NCBI-ProteinID:
XP_054910309
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MKVAGISLLLMLCSCEGARVAESRDDNSVFDLFELIRVPSKNHGVTLAKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSVHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDIVYSTENKQQVVSIEEVDLATGSWKNITLFVQEDRAQLFAGCEEVNTAELDA
PIQNILTQGTPAGAQLRVGKGAVNDRFMGVLQNVRFVFGTTLDAILRNKGCQSSASSDTM
IVTNLNGSSAIRTEYSGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSNELRQLTN
ENKLIKNRIGIHSGVCIHNGIVRKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNICEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQLGGRDCVGEGRQT
EKCEKSPCPINGNWGPWSPWGTCTLTCGGGVQTRKRLCNDPAPLHGGKECVGDAIDKQMC
NKKACPIDGCLSNPCFSGAKCTSFPDGSWKCGKCPVGFTGNGVKCRDVDECKEVPDACFE
FNGVHRCENTDPGYNCLPCPPRYSGPQPFGKGVEEAVANKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFSDPMFRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGTGDACDDDDDNDGIPDDRDNCPFVYNPRQYDYDRDEVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYIYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTAGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggcaggaataagtttgctcttgatgctttgttcctgtgaaggtgcgagagtc
gcagagagtcgagacgacaatagtgtgtttgacttgtttgagctcatccgagtccccagt
aagaaccacggggtcaccctggcgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatcccccccgtgcccgagagcgccttcagggacctgatcgactcg
gtccacgccgaaaggggcttcctactcctgctcaacttcaagcagtttaaacggacccgg
ggcagcctcctgaccgtggagaagcgagacggctccggacccgtcttcgagatcgtctcc
aacggcaaggcgaacacgctggacatcgtttactccaccgagaacaagcagcaggtggtt
tccatcgaggaggtggatctggccacgggtagctggaagaacatcacgctcttcgtgcag
gaggaccgggcgcagctattcgcaggatgcgaggaggtgaacaccgccgagctggatgcg
cccatccagaacatcctgacgcaaggcactccagccggcgcgcagctccgagtcgggaag
ggagcagtgaacgacaggttcatgggggtgctgcaaaacgtgcggtttgtgtttggaaca
actctggacgcgattctgcgcaacaaaggatgccagagctctgcttcaagtgacacaatg
attgtgactaacctgaacggctcctctgccatcagaacagagtactctggacacaaaacc
aaagacctgcagatggtgtgtggtttctcctgtgaggatctggtcagcatgttcaaggag
ctgaaaggcctcggtgtcgtggtaaaggagctgtccaatgagctccgccaactgacaaat
gagaacaagcttattaagaaccggattggcattcatagtggcgtctgcatccacaacggc
attgtgcgcaagaacaaagacgaatggactgtcgatgactgcactgagtgcacttgtcag
aactctgccaccgtgtgccgcaaaatctcctgccctctgatcccgtgtgccaacgctacc
gtccccgatggcgaatgctgtcctcgttgtggaacaccgagtgactatgccgaggacggc
tggtcgccctggtctgaatggactcattgttctgtgtcttgtgggcggggcatccagcag
cgtgggcgctcttgcgaccgtatcaataatatctgcgagggcacctcggtgcaaacccgc
gactgctacctccaggagtgtgacaagcgcttcaagcaggacggaaactggagtcattgg
tcaccctggtcgtcgtgctccgtcacctgtggttctggtgtcatcactcgtatccgcctc
tgcaactcccccacccctcagctgggaggcagggactgtgtgggagagggccgacaaact
gagaagtgcgagaagtctccatgtcccattaacgggaactggggaccctggtcaccatgg
ggtacgtgcaccctcacctgtgggggtggagttcaaactcgtaagcgcctgtgcaatgat
cctgccccactgcatggtggtaaagagtgtgttggcgatgccatagacaaacagatgtgc
aataaaaaagcttgcccaatagatggatgcttgtccaacccttgcttttctggagccaag
tgcactagtttccctgacggttcctggaagtgtgggaagtgcccagttggcttcacagga
aatggcgtaaagtgcagagatgttgatgagtgcaaggaggttccagatgcgtgctttgag
tttaacggtgtgcaccgctgtgagaacacagatccaggatacaactgtctgccctgccct
cctcgctactcaggaccccaaccgtttggcaaaggtgttgaggaagctgttgctaacaaa
caggtgtgcacaccccgtaatccttgccttgatggaagccatgactgcaacaaaaacgct
cgctgcaactacctcggacacttttccgaccccatgttccgctgtgagtgcaagcctgga
tatgctggcaatggtcatatctgtggagaggacacggatttggacggatggcccaatgct
gatctagtatgtgtggagaatgccacctaccactgtaaaaaggacaactgtcccaatctt
ccaaactcagggcaggaagattatgataaggatggaactggagatgcttgtgacgatgat
gatgacaatgatggtattcctgatgacagggacaactgtccattcgtgtacaatcccagg
cagtatgattatgaccgcgatgaagtgggggatcgctgtgacaactgcccttacaatagc
aacccagaccagacagacacagacaacaacggcgagggagacgcctgtgctgtggacatc
gatggagatggaatactgaatgagaaggacaactgtccctatatatacaacgttgaccag
agagacacagatctggacggagtgggagacatgtgtgataactgtccactggaacataat
cccgatcaggtggattcagatgacgatagagtgggagacaagtgtgacagtaaccaggac
atcgatgaggacggacaccagaacaacctggacaattgcccatatattcccaatgccaac
caggctgatcacgataaggatggcaagggagatgcctgtgaccatgatgacgacaacgat
ggcatccctgatgacaaagacaactgtagactggccttcaaccccgaccagctggattct
gatggcgatggtcgtggagatgcttgcaaagacgactttgaccaagacaacgttcctgat
atctatgatgtttgtcctgagaactttgatatcagtgagacagacttccgcaagttccag
atggttcctctggatccaaaaggcacctcccagatcgatcctaactgggttgtccggcat
caaggcaaagagctggttcagaccgtcaactgcgatcctggcattgcagtcggttaccac
gaattcaacgccgtggacttcagtggaactttcttcataaacacagagagagatgacgat
tatgctggctttgtgttcggctaccaatccagttccaggttctatgtcgtgatgtggaag
cagatcacacagacctactggtccagtaaacccaccaaggcccagggatactcaggtctg
tccatcaaagtagttaactccaccaccggcccaggagagcacctcagaaatgctctctgg
cacacaggcaacaccgcaggacaggtccgtactctctggcatgaccctaaaaatgtcggc
tggaaagacttcactgcctacaggtggcatctgattcacaggccaagaacaggattgatc
agagttgtgatgtatgagggtaagaagatcatggcagattctggtagcatctatgacaag
acgtatgcaggtggcaggctaggtctttttgtcttctcacaggaaatggtttatttctca
gacctcaagtatgaatgcagagatgcataa
DBGET
integrated database retrieval system
