Poeciliopsis prolifica (blackstripe livebearer): 129379047
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Entry
129379047 CDS
T09758
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pprl
Poeciliopsis prolifica (blackstripe livebearer)
Pathway
pprl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pprl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129379047 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprl03400
]
129379047 (lig4)
Enzymes [BR:
pprl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129379047 (lig4)
DNA repair and recombination proteins [BR:
pprl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129379047 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
129379047
NCBI-ProteinID:
XP_054915576
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MMEGTSKSGAAAAEPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHAAL
HKDNLKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEASKLLNYR
APTTSQGEAGDFAGMAYFVLKKRCASQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLH
LITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLKKVCQQLHNPSV
SLSEVSIELFSAFKPMLAAVANIRNIEKQMGNSPFYLETKLDGERIQLHKDGDVYKYFSR
NAFEYTQQFGGSPLEGSLTPYIHNVFKSNVVNCILDGEMMAFNPTAGTFMQKGSKFDIKR
LMDDSELQTCFCVFDVLLVNNQKLGKEPLKKRYEVLQTVFTPVKGRIHVVPKTEVGTMQD
VVSALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGK
GRRGGMMSHFLCAIAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKND
PPQSILCGVEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTSCTLRFPRIEKIREDKEWHQC
MTLAELDQFRSKASGKLASRHLHIDSDEPQKKKRKLPVKPKKVVGVIDHFKPQDLSGVSK
EMDMFEDVEFCILNGTESHPKSELEKGVARCGGIVVQNPGRDTYCVVAGMENMRVKNLIS
SNQHDVVWASWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVNTDEQQL
REVFSRIDGEQAAAAASVSAAQLEERYGWDDLPTSMFRPFTFYFDILDPKSTTGATCLDI
RALEVRYHGGMVMKTLEEGVSHVVVEEETRVLDLRMLRRNFRKKFKIVRDSWVTDSIAAG
YLMDDADYLI
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgatggagggaacttccaaaagcggagcggctgctgcagaacccagtgtggctgctcag
gttcctttccttcacttgtgcacaactttagagaaaatccagaagtccaaactgcgtcca
gataaatccaagatccttggggatttcattgaatcatggcggaaatttcatgccgcgctc
cacaaggacaatctgaaaactacagactccttctaccctgctatgcgcctcatcgtcccg
ccttttgagcgagagcgaatggcctatggcatcaaagagagcatgctagctaagctctac
attgatgttttaggcctcccaaagaatggcccagaagccagtaagctgctgaactatcgt
gctccgactacatcccaaggagaagcaggggatttcgccggcatggcgtactttgtgctg
aagaagcgatgtgccagccaaggaaacctcagcatcaaagaggttaatgactttctcgac
tcagtggccatcaacaatgccagcaagcagaaggatcaggtgaaaaagagcctgttgcat
ctcatcactcagagctctgctctggagcaaaagtggcttattaggatgattctgaaggac
atgaagcttggagtcagcaaggaaactgttctccaggtctttcacccggatgccgcggag
ctctataatgtcaacacggacttaaagaaggtgtgccagcaactgcacaacccctctgtg
tctttaagtgaagtctcgattgaactgttctctgccttcaagccaatgttggcagcggtg
gccaacatccgcaacatcgagaagcagatgggaaacagccccttttaccttgagacgaag
ctggatggggagcgtattcagcttcacaaggatggagacgtgtacaagtacttcagccgg
aacgcatttgaatacacgcagcagttcggaggatcaccgcttgagggatcgctcactcct
tacatccacaacgtgttcaaaagcaacgtcgtgaactgcatcctggacggcgagatgatg
gcgttcaacccgacggcggggaccttcatgcagaaagggagcaaatttgacattaagaga
ctgatggacgactctgagctgcagacgtgcttctgcgtctttgacgtgttgctggttaat
aaccaaaaactgggcaaagaacccctgaagaagcgatacgaggttctccagacggtcttc
acccccgtcaagggtcggatacatgtggtgccaaagacagaagtcggaacaatgcaagat
gttgttagtgctcttaatgatgccattgacaacagggaagaagggattatggtgaaggac
cctttgtccatctacaaacccgataaacgtggggagggttggctgaaaataaagccagaa
tatgtggacggcttgatggatgagctggacctactgattgttggtggttactggggaaaa
ggaagacggggtgggatgatgtcccactttctatgtgctattgcagaagcgccaaagcct
ggtgagaagccgtcggttttccactccttttgccgaattggctcgggttacaccatgaaa
gagttgtatgaccttgggttgaagcttgcgaagcattggaaagtctaccggaaaaacgac
ccgccgcagtccatcctctgtggagtggagaaaccggaagtgtacatcgaaccctgcaac
tcggtcatcatccaggtcaaagcggctgagatagtcggaagcgacatgtacaagaccagc
tgcaccctgcggttccccaggatcgaaaagatccgcgaggacaaagagtggcaccagtgc
atgactctggcagagctggatcaattccgcagcaaggcgtcagggaaactggcctcgcgg
caccttcacatcgacagcgacgagccacagaagaagaagcggaagctgcctgtcaaaccc
aagaaggtggttggcgtcattgaccacttcaagccccaggatctgtccggagtttccaaa
gagatggacatgtttgaagatgtggagttctgcatcctgaacggcactgaaagtcaccca
aagtcggagctggagaagggcgtggccaggtgtggcggcattgtggtccagaacccggga
cgggacacttactgcgtggttgccggcatggagaacatgcgcgtgaagaacctgatttcc
tccaatcagcacgacgtggtctgggcgtcatggctgctggagtgcctggatcagaaggaa
gtggtgccatggcaaccgcgccacatgatccacatgtcgccctcgaccagggaacacttc
gccaaggagtacgacagctatggcgacagctactttgtcaatacggacgagcagcagctg
agggaagtgttcagcaggatcgacggcgagcaggcggcggcggcggcgtccgtcagcgcg
gcgcagttggaggagcgttacggctgggatgaccttcccaccagcatgttcagacccttc
accttttactttgacatcttggatccgaaaagcacaacaggtgccacctgtctggacatt
agggcgctggaggttcgataccacggagggatggtgatgaagacgttggaggaaggagtt
tctcacgtcgttgtcgaggaagagacgagagtcctggatctgaggatgctgaggcggaac
ttcaggaagaagtttaagattgttagagactcgtgggtgaccgactccatcgcagcaggg
tatctgatggatgatgctgactacctgatttga
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