Pimephales promelas (fathead minnow): 120459009
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Entry
120459009 CDS
T08155
Symbol
tdg.2
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120459009 (tdg.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120459009 (tdg.2)
Enzymes [BR:
pprm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
120459009 (tdg.2)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
120459009 (tdg.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
120459009
NCBI-ProteinID:
XP_039502825
LinkDB
All DBs
Position
Unknown
AA seq
438 aa
AA seq
DB search
MAVRPPIKMEERQYSSLTAPMDYLQYWYQTNPQQYQPEQVPQYHQLVNASQYGERPMEDK
IMTDLAVHQDPYLDQPHQPHQDPYLDQPHQDPYLDQPHQDSYLDQPQHHHHHQPSVQQPA
PPALTAKGKKRGRPLKGEGKERTEAEESAKKAKRTLDRFNGMSVEEVMSRKLPDVITHNL
DLLIIGINPGLLSAFKGRHYPNPGNHFWKCLFLSGLTEEQLNHMHDQTLPERYGIGFTNM
VERTTPGSKDLSNKEIREGGHQLLEKLQKYRPLIAVFNGKCIYETFCKEIFGVKAKNLEF
GLQPYKVPETETVCYLMPSSSPRCAQFPRAQDKVHFYIKLKDLRDQLKGEVKTQEIQETN
YTFDVALAKEDAKRLAIKEEQHDPEYEKTCAHGSWGEPQQAFGAHPSTDTDQVTDNRWTM
QPFADQIPDIRCSNSRTT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcagtaagaccaccaattaagatggaagaaaggcagtattcatctctgacggcccct
atggattatcttcagtattggtatcaaaccaatccccagcagtaccaaccggagcaggtg
ccacagtaccaccagctggttaatgcttcacagtatggcgagagacccatggaagacaaa
atcatgactgatttagcagtgcatcaagatccatatctggatcaacctcatcagcctcac
caagatccatatctggatcaacctcatcaagatccatatctggatcaacctcatcaagat
tcgtatctggatcaacctcaacatcatcatcatcatcaaccctctgtccaacaaccagcc
cctccggcattgacagctaaaggaaagaaaaggggaaggcctctaaaaggtgaaggaaag
gaaaggacagaagccgaggagtctgccaagaaagcaaagaggacgttagatcggttcaac
ggcatgtcagtggaggaagtcatgtctagaaagctaccagatgtcatcacacataatctt
gacttgctgattatcggcatcaatcctggactgttgtcagccttcaagggaagacattat
ccaaatcctgggaaccatttttggaagtgcttgtttctctccgggctgactgaagaacag
ctgaaccacatgcacgatcagacactacctgaacgctatggcattggtttcaccaatatg
gtggagaggaccacacctgggagtaaagacctatcaaacaaagagatccgtgaaggtggc
caccagcttttggaaaaactccagaaatacagacctttaatcgctgtgttcaatgggaaa
tgtatttatgaaacattttgcaaggagatatttggagtgaaagccaagaacttagagttc
ggattgcagccctacaaagtgcccgaaacggagacggtttgctatctgatgccatcgtca
agcccacgctgtgcccagtttcctcgtgctcaggacaaagtgcacttctacatcaagcta
aaagatctcagggatcagctgaagggagaggtgaagactcaggagatccaagagacaaac
tacacatttgatgtggctctggccaaagaggatgccaaaagattggcaattaaagaagag
cagcatgaccctgagtacgagaagacctgtgcacatggatcatggggggaaccacagcaa
gcgtttggagcccatccgtctacagatacagaccaggtaacggacaaccggtggacaatg
cagccgtttgcagaccagattccagacatcagatgtagcaacagccgaacaacctga
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