Pimephales promelas (fathead minnow): 120468672
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Entry
120468672 CDS
T08155
Name
(RefSeq) slit homolog 1 protein-like
KO
K06838
slit 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120468672
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Axon guidance molecules
120468672
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
EGF
Laminin_G_2
Laminin_G_1
hEGF
LRR_4
EGF_TEN
LRR_5
LRRCT
LRRNT
LRR_9
LRR_1
LRR_14
EGF_3
EGF_CA
EGF_2
JAG1-like_EGF2
EGF_Teneurin
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
120468672
NCBI-ProteinID:
XP_039513155
LinkDB
All DBs
Position
Unknown
AA seq
1075 aa
AA seq
DB search
MRRVSFTLHFNNQNSTPSCIFCFLACVAIAAKEQYHIPGAEDTRLNKDCNSKPVCPPKCR
CEATVVDCSNLRLTKFPEHLPLSTTELRLNNNDLSILEATGLFRPLTHLKKINLSNNKIT
EIEDGAFDGASSVVELHLTANHLVSIRGGMLRGMDGLRMLMLRNNRIRCIHNSSFSGLQN
VRLLSLYDNQLATIMPGAFDTLPNLSTLNLLANPFNCDCRLSWLGEWLRSRQIVTGNPRC
QNPAFLREIPLQDVAKPDFICDKAVTEEDRSCVPKPKCPEECTCLESVVRCSNKHLLGLP
RGVPHNVTELYLDGNLFAAVPKELSAFRHLQLVDLSNNKISSLSNSSFSNMSQLTTLILS
YNALRCIPPLVFKGLSSLRLLSLHGNNISELHHEIFRDAASLSHLAIGANPLYCDCRLRW
LSDWVKSGYKEPGIARCAGPRGMEGKLLLTTPGNTFQCTGPVDPSVSGKCSPCSSNPCQN
QGRCHEDPVHQYKCSCPQGYKGKNCEVSVSACEGNPCVNGGTCYSEEARKGFSCMCPLGY
DGQFCEVDVDDCVDNKCENGTICVDGVGNYTCACPHPFSGPKCEEYEEDLCYPGQNPCHR
GSTCIPTVTGPKCICPPGFVGDDCSIDFNECEGHYCQNGARCVDHVAGYTCVCPQGYSGR
LCETSPPSGCELLLCENGAPCVESDGTAVCQCLSGFGGPRCEKLLSVNFIDRDSYLLLSD
VKNWPQTNITLQVSTAEDNGILLYNGVNDHIAVQLHEGHVKVTYDAGSQSGSTIYSSEIV
NDGQFHTVELVTYDRMVNLSVDGGLPTTLDSFGHVQPLTRDAPLYVGGMPENAQSLSFNQ
WPPLNGSSFQGCIRNLYINNELQDFTHTQMKPGVVPGCAACQDLHCGNGVCEPDSGVGPV
CHCQPGWGGPQCDRVLLAAATNPCQKNKCVHGTCVPVDLQSYRCECVDGFLGPLCSQQHV
CAALSCQHGSCEVSETGQAQCVCDSGYSGQLCDIVAPCQGEFVRDFHRVWRGDVQCRSTQ
PMSWVECSGGCGPETGFCCGGSRLRRRRYSFQCDDGSSFSQDVEKTVECSCGKCV
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcgagtcagctttactctccactttaataatcagaactcaacacccagctgtatc
ttctgttttcttgcatgtgttgccatagcagccaaggaacagtaccacatcccaggcgca
gaggacacacgtttgaataaggactgcaacagcaagcctgtctgtccacccaaatgccgc
tgtgaagctactgtggtggactgctcaaatttacgcctaaccaagttcccagaacacctt
ccactctctacaactgaactacgtctcaataacaatgacctctctatcctggaggcaaca
ggactctttcggcccctcacacatctcaagaaaataaaccttagcaacaataaaatcact
gagattgaggatggagcttttgacggtgcgtcttccgtggttgaacttcacctgaccgcc
aaccacctggtgtccatacgaggagggatgctgcggggaatggacggattgcgcatgctg
atgctaaggaataatcgcatccgttgcatccacaacagcagcttctcaggcctgcagaac
gtgcgtctgctctcgctctacgacaaccagctcgccacgatcatgcctggagcctttgac
acgctgccaaacctctccaccctaaacctgcttgcaaacccttttaattgcgactgtcgt
ctgtcctggcttggagaatggctacgatctcgtcagattgtgacgggaaacccccgctgt
cagaacccagcctttctcagagagatcccactgcaggatgtggcaaagcctgacttcatt
tgtgacaaggcggtgactgaagaggacaggagctgcgtcccgaagcccaagtgcccggag
gagtgcacttgtctggagtcagtcgtgcgctgcagcaacaaacacttgctcggtttaccc
cgcggcgtcccacacaatgtcactgaactttacctggatgggaatctgtttgccgcggtt
cccaaagagctctcagcgttcagacacctgcagctggttgacctgagcaacaataaaatc
agttccttgtccaactcgtctttctccaacatgagtcagctgaccacactcatcttgagt
tataacgccctgcgctgtatccctcctcttgtgtttaaaggactgtcctctcttcgactg
ctatctctccatggcaacaatatatctgaattacaccacgaaatcttcagagatgctgca
tctctatcacacctggccattggcgcaaacccactgtactgtgactgtcggctgcggtgg
ctttctgattgggtaaaaagcgggtacaaggaacccggcatcgcccgctgtgccgggccg
cggggtatggagggaaaactactgctcacaacaccaggcaataccttccaatgcacaggt
cccgtggatccgtctgtgtctgggaaatgcagcccgtgttcttcaaacccctgccagaat
caaggccggtgccacgaggacccggtgcaccagtacaagtgcagctgtccgcagggttac
aagggtaaaaactgtgaggtttctgtcagcgcctgtgaaggcaatccatgtgtaaatgga
ggcacctgttacagcgaagaggctagaaaaggcttcagttgcatgtgtcctctgggatac
gacggtcagttctgtgaggtggatgttgacgattgtgtggataacaagtgtgaaaatggc
accatctgtgtggacggagtgggcaactacacctgcgcctgtccgcaccccttctcaggg
ccaaagtgtgaagagtatgaggaagatctgtgttatcctggccagaatccgtgtcatcgc
ggctctacttgtataccgaccgtcacaggaccgaaatgcatctgtccgcctggttttgtg
ggtgatgactgcagtatagattttaacgaatgcgaggggcattactgccagaacggggcg
cggtgtgtggatcatgtagctggatacacatgcgtctgtccacaaggttacagtggtcgg
ttatgcgagacgtctcccccctccggctgtgagctgttgctctgtgagaacggcgccccc
tgtgtggagagtgacggtactgcagtgtgtcagtgtctctctgggttcgggggcccgcgc
tgtgagaagctcctcagcgttaacttcatcgacagagattcatacctgctgctcagcgac
gtcaaaaactggcctcagaccaacatcactctacaggtgtccacagcggaggacaacggc
attcttctctacaacggcgtcaatgaccacatcgctgtacagttacacgagggacatgtc
aaagtaacctatgatgcgggaagtcagtctggcagcaccatttacagctctgaaatagtg
aatgacggacagtttcataccgttgaattggtcacttatgaccggatggtcaatctttca
gttgacggagggcttcctactactctggacagctttggacacgtccaacccctcaccaga
gatgcaccactatacgttgggggtatgcctgaaaatgcgcagtcgctgtcttttaaccag
tggccgcctctcaacggatccagttttcaaggctgcattcgtaacctgtacattaacaat
gagctgcaggacttcacacacacgcagatgaagcccggagtggtgccagggtgcgcggcc
tgtcaggatctgcactgtgggaacggcgtgtgtgagccagactctggcgttgggcccgtg
tgccactgtcagccgggatggggcggcccacagtgcgaccgggtcctgttggcggctgcc
accaacccctgccagaagaacaagtgtgttcacggcacctgtgttccggtggacctgcag
tcttatcgctgtgagtgtgtggacggtttcctcggcccgctgtgcagtcaacagcacgtg
tgtgccgcgctctcatgccaacacggctcctgcgaggtgtcagagacggggcaggcgcag
tgcgtttgcgacagcggttacagtggccagttgtgtgacattgtggctccttgccaaggc
gagttcgtgcgggacttccaccgggtttggcgcggcgacgtccagtgccggagcacgcag
ccgatgtcctgggtggagtgtagcggcgggtgcgggccggagacgggcttctgctgtggc
gggtccaggctacgacgcagacgctacagcttccagtgcgacgatggcagttccttctca
caggatgtggaaaagacagtcgaatgcagctgtggaaagtgtgtgtag
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