Pimephales promelas (fathead minnow): 120473577
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Entry
120473577 CDS
T08155
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120473577 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120473577 (kdm2ba)
04121 Ubiquitin system [BR:
pprm04121
]
120473577 (kdm2ba)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120473577 (kdm2ba)
Enzymes [BR:
pprm01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
120473577 (kdm2ba)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
120473577 (kdm2ba)
Ubiquitin system [BR:
pprm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120473577 (kdm2ba)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
120473577 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
120473577 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
120473577
NCBI-ProteinID:
XP_039519424
LinkDB
All DBs
Position
Unknown
AA seq
871 aa
AA seq
DB search
MAMSLSADDEDYDSDTAEQQRLPNRPKPKMAASTATTPAATTSSSTATAVKLPSNRTSSG
ARRRRTRCRKCEACVRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVC
GEAGKEDTLDDEDEKFNAMLMECSICNEIVHPNCLKVKDAAGVVNDELPNCWECPKCNYA
GKTGKACKQKRGPGFKYASNLPGSLLREQKAGRDGREEGDQTLTGAASIKRKSEREETPR
LKTEDLPSRLPPLLTPSGLPRPRSEVPNFLRKKRKLFDDDEEEEEASAKKKSKKPWRSEE
PLIPKLSHMRTEEEEDNSDEEEDRQEKREPPRRSFKKDYSTVRKEESHEEERREERDSPF
RSLKEFNTLKKEEDQEEDKDEDDEEEEDESNGKRGRDSSPALKNHSLSLESDASRCSSPR
AGPSSEGSETQEKAPRPRARRHRRKPPNRQLSAELSKQLNMEIRRTEHSLANENQQPLKS
EPEDSENEEPKRGLRNGTTGNVGGGGGGVERGAGGEGGGERPHLRAREMNGTSWELRHFY
PPQITPLGLNRSSPTVRPLPARSPPKCVQMERHVIRPPPICPPPDRLPLADGRNHIAPRE
AWLAIFSHLSHRELCVCMRVCRTWNRWCCDKRLWTHIDLKRCKSITPLMLSGIIRRQPIT
LDLSWTNISKKQLSWLINRLPGLRVLLLSGCSWVAVSALCTSSCPLLRTLDLQWVEGLKD
PQMRDLLSPPTDNRPGQMDTRSKLRNVTDLRLAGLDLTDCSLRLIIKNMPLLSRLDLSYC
NHINDQSVNLLTAAGTTTRDSLTDVNLSVCNRVTDQSLSYFKRCGSICRIDLRFCKQVSR
QACERFIAEMSVIVPFKLQEDKLLQKLHSTP
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atggccatgtcactgagcgccgacgatgaggattacgactcggacacagccgaacagcaa
cggcttcccaatagacccaagcctaaaatggctgcatcaacagcaacaactccggcagca
accacgtcttcatccactgctacagcggtcaagctgccatccaatcgaacctcctctgga
gctcgccgcaggcgcacacgatgccggaagtgcgaggcatgtgtgcggacggaatgtgga
gagtgtcacttctgtaaggacatgaagaagtttggaggacctggacgaatgaaacagtct
tgcattatgagacaatgtatagcgcctgtgttgccgcacacagcagtgtgtgtggtgtgt
ggtgaagccggtaaagaagacacacttgatgatgaagatgaaaaatttaacgccatgctc
atggagtgctccatctgcaacgagattgtccacccaaactgcctaaaggtaaaggatgca
gccggggtagtaaatgatgagcttcctaactgctgggaatgtccaaaatgcaattatgct
gggaaaactggaaaagcctgcaagcaaaaacggggcccaggcttcaagtacgcatccaac
ctgccagggtcccttctgagggagcaaaaagcaggtcgtgacggtagagaggaaggggac
cagacattgacaggtgcagcatccatcaaaaggaagagtgagagggaggaaactcccaga
ctgaagactgaggatctgccctcacgtctacccccactcttgacccccagtggcctgcca
agaccacgatccgaagttcccaactttttgagaaagaagaggaagttatttgatgacgat
gaagaggaagaggaggctagtgctaaaaagaagtcgaagaaaccctggaggtctgaagag
cctttgattcccaaactctctcacatgagaacagaagaggaggaagacaactctgatgag
gaggaagacaggcaggagaagcgagaaccgcctcgtcgttcatttaagaaggactacagc
acagtgagaaaagaggaatcgcatgaagaagagagacgggaggagagagattcacctttc
agatccctaaaggagtttaacaccctaaagaaagaagaagaccaagaagaagacaaagat
gaagatgatgaggaagaggaggatgagagtaatggcaaacgaggcagggacagcagccct
gcactgaagaaccattctttatcgcttgagagtgacgcatcgcggtgcagctccccaagg
gcagggccgagcagtgaaggcagcgagacgcaagaaaaggcaccacgtcctcgggcgagg
cgacaccgacggaagccccctaaccgccagcttagcgcagaacttagcaagcagcttaac
atggagatccgtcgcacggagcattcactggccaatgagaaccagcagccactcaagagt
gaacccgaggacagcgagaacgaggaaccaaagagaggcttacggaacgggactacaggg
aatgtgggaggaggaggtggaggagtagaaaggggagcaggaggagagggagggggggag
cgaccacacttacgagcaagggagatgaacgggacgtcttgggagctgcggcacttctac
cctcctcagatcacccctcttggcttgaaccgcagttcacctacagtcaggccacttcct
gcacgttcccctcccaagtgtgttcagatggagcgccatgtgatccggccacctccgatt
tgccctccacctgataggctaccactagctgatgggcgtaatcacattgcgcccagagaa
gcgtggttggctatcttcagtcacttgagccatcgtgaactttgtgtgtgcatgcgcgtg
tgcaggacatggaatcgctggtgttgtgacaagagattgtggactcatatcgatttgaag
cgctgtaagtccatcacaccactcatgctgagtgggataattcgcagacagcccatcaca
ttggacttgagctggaccaacatctccaagaagcaattaagctggcttattaaccgacta
ccaggactgagggtgctcctcctatcaggctgttcatgggtggccgtttcggctctctgc
acatccagctgtcctctactgcgtactctagatctgcagtgggtggaggggctcaaagac
ccccagatgagggacctactatcccctccaactgacaacagaccaggtcagatggacaca
cgcagcaaactacggaatgttactgacctgcgtctggctggtttggacctcacggactgc
tctctgcgtctcataattaaaaatatgcctctactctcccgtctggacttgagttactgc
aaccatatcaatgaccagtcagtaaacctgctgactgctgcagggaccaccacgagggac
tccctaaccgatgtcaacctttctgtgtgcaacagggtcactgatcagtcactgagttac
ttcaaacgctgcggaagcatctgccgcattgacctgcgattttgcaagcaggtgagccgt
caggcatgcgagcgcttcattgctgagatgtcggtcattgttcccttcaaactgcaagag
gataaactgctccaaaaactacacagcaccccctag
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