KEGG   Pimephales promelas (fathead minnow): 120474221
Entry
120474221         CDS       T08155                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    120474221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:pprm03000]
    120474221
   04121 Ubiquitin system [BR:pprm04121]
    120474221
   03036 Chromosome and associated proteins [BR:pprm03036]
    120474221
Enzymes [BR:pprm01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     120474221
Transcription factors [BR:pprm03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    120474221
Ubiquitin system [BR:pprm04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     120474221
Chromosome and associated proteins [BR:pprm03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    120474221
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     120474221
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box Cupin_8 JmjC PsbP LRR_At1g61320_AtMIF1
Other DBs
NCBI-GeneID: 120474221
NCBI-ProteinID: XP_039520289
LinkDB
Position
Unknown
AA seq 1285 aa
MEACAESGRKLRSICRRMYDENEDLSDVEEITNIRGFSLEDKLESNLYNNELVQHMDGKD
FTYEYVQREALRTPLIFKAKNGLGIRMPDPEFTVSEIKGLVGSRRNVDVMDVSTQKGSEM
SMAQFVRYYETPEDERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPLHLKQKQ
TEATNVMSEMKYPKVQRYCLMSVKGCFTDFHIDFGGTSVWYHVFKGRKVFWLIPPSSHNL
SLYEDWVLSGKQSDVFLGDRADSCQRVDLKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLTVYEIENRTKVHSKFRYPFFYEMCWYVLERYVNCLTRRSHLSLELRGHAAEP
KLVTECLVAVPRLDMEENSCETQLERTEGVTQPSSAVAPYQTFKPPANDSDDSSKSLPSE
CPKTPSGSPGTEHSGKWTHLTEFELSGLKALVEKLESLPETKRCVPEGIEDPQALLDDVK
VVLKEHADDNPKLAITGSPIVCWPKKTGKPRPLNRPKPKMGSSPSAAPCSTAGGVKLSSS
RGSSSARRRRTRCRKCEACTRKECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTA
VCLLCGEAGKEDTVENEEDKFNWMLMECSICNEILHPACLKEKDSGGVVNDELPNCWECP
KCNHAGKIGKATKQKRGPGFKYASNLPGSLLKEQRMIRDIKEELDSNMSTESYTPTLSPV
MKKKTEREDNPTCKSEDAFKKRSPKMEDNPLRRKRKLFEKDSDSDSNVRKKKKHSKPDAL
STSNVLGPIKTEREEEDDEDKIEELDRRPFSFVPSEEDDGDDEREEEEEEETMKEKSRRE
ENGKLLHKTSDKWEGDQSQGRCTQAGPSNDTGVDAQLRIQRKTKRKPRLPNKELSKELSK
QLNQEIQKTEDRLAHQNSRTVKTEPDSDGEDRKPLNNGSSHLRDWLGPKRELNGSLREQS
PASWIRTTPTPIFRPTPCRSPPKCVQMERHVIRPPPISPPPDRLPLDDGKNHIMHREVWM
AVFSHLTHQDLCVCMQVCKTWNRWCCDKRLWTKIDLNRCKSITPLMLSGIIRRQPVSLDL
SWTNISKKQLSWLINRLPGLRVLLLAGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDNQI
RDLLSPPTDNRPGQLDSRSKLRNVEDLCLAGLDITDETLKLIIKHMPSLSQMDLSYCNHI
TDQSVNILTAAGTTTRDSLTHINLSVCNKVTDLSLTYFKRCGNICHIDLRCCKQVTKEGC
EQFIAEMSVSVQFGLIEEKLLSKLS
NT seq 3858 nt   +upstreamnt  +downstreamnt
atggaggcgtgtgcggaatccggacgcaaactgcgctcaatctgcagaaggatgtacgat
gagaacgaggatttgtcagatgtggaggaaatcacaaacatcaggggcttcagcttggag
gacaaacttgagagcaatttatacaacaatgaacttgttcagcatatggacggaaaagat
tttacctatgaatatgttcaaagagaggctctccgaaccccactcatatttaaagccaaa
aatggactgggaattagaatgccggatccagaatttactgtaagtgaaatcaagggtttg
gttggcagcagacggaatgttgatgtgatggacgttagtacgcagaaaggctccgagatg
agcatggcgcaattcgtccgctactatgagacgcccgaggatgagcgcgacaagctgttc
aacgtcatcagcctagagttcagtcacaccaaactggagaacttaatcaagagacctacg
gtggtggatctggtggactgggtggacaatatgtggccactgcatcttaagcagaaacaa
actgaagccacaaacgtcatgtctgagatgaaatatcccaaagttcagagatactgtctg
atgagtgtaaaaggctgtttcactgacttccacattgacttcggcggcacatcggtatgg
tatcatgtcttcaaaggaaggaaggtcttttggctgattcctccaagctcacacaatctg
tctctgtatgaagactgggtgctgtcaggcaaacagagcgatgtcttcctgggtgatcgt
gcagacagctgtcagcgagtagatctgaaacagggctacacgttcttcatcccttcaggt
tggatccatgccgtctacactccagaggacaccctggtgtttggcgggaatattctacac
agttttaacattcccatgcagctcactgtttatgaaattgagaacagaacaaaggtgcac
tccaaattccgctaccctttcttctatgagatgtgctggtatgtgctggagaggtacgtg
aactgcttgaccagacgttcgcacctcagcctggagttacgtggtcacgctgctgaaccc
aagcttgtaaccgagtgtctcgtcgctgttccccggctggacatggaggagaactcgtgt
gagacacagttagagaggacagagggtgtgacccagccctcctcggctgtcgctccctat
cagaccttcaaacccccagccaatgattctgatgacagctccaagtccctcccttcagag
tgtcccaagactccgtctggctcacctggaacagagcactcggggaaatggacccacttg
acagagtttgagttgagtggactcaaagccctggtggagaagcttgaatcccttccagag
acgaagaggtgtgttccagagggcatcgaggatccacaagcgctgctagatgacgtgaag
gttgtcttgaaggaacatgcagatgacaatccaaagttggccatcactggttctcctatt
gtatgctggccgaagaagacaggcaagccacggccgcttaatcggccaaaacccaagatg
ggctcatctccatctgctgctccatgctcgacagcaggcggagtgaagctatcatccagt
cgtggttcatctagtgcccggcgcaggcgaacacgctgcaggaagtgtgaggcatgtacg
cgcaaagagtgtggggagtgccacttctgcaaggacatgaagaagtttggtggaccaggc
cgtatgaagcagtcctgcatcatgagacagtgcatagcgcctgttctacctcacactgct
gtgtgtctgctgtgtggagaggctgggaaagaagacacagtagagaatgaggaggacaag
ttcaactggatgctcatggagtgctctatctgcaatgagatcctccatccagcatgtttg
aaggagaaggatagtggcggcgttgtgaatgatgagttaccaaattgctgggagtgtcct
aaatgcaatcatgctggaaagatagggaaagccacgaagcaaaaaagaggcccagggttt
aagtacgcctccaatctccctggctctttgctcaaagagcagcgaatgatccgggacata
aaggaagagctagactcgaacatgtctacagagtcctacacacctactctttcacctgtc
atgaagaagaagacagaacgagaggacaatcctacctgcaagtccgaagacgcatttaag
aaacgttcccccaaaatggaggacaacccactccgcaggaagagaaaactctttgaaaag
gactccgactcagattccaatgtcaggaaaaagaagaagcactcaaagcctgatgctctt
tcgacctctaatgtcctgggaccgatcaagacagaaagagaggaggaggatgatgaggat
aaaatagaagaactagacaggagacccttcagttttgtaccctcagaagaggatgatgga
gatgatgaaagggaggaggaagaagaagaggagacaatgaaagagaagagtaggcgagag
gagaatgggaagcttttacacaagacctctgataaatgggaaggtgaccaatcacaggga
cgttgtacacaggcggggcccagcaacgacacaggtgttgatgcacagttgaggatccag
agaaaaaccaaacgtaaacctcggctgcccaacaaagaactgagcaaggaactgagcaaa
caactcaaccaggaaatccaaaagacggaggatcgtctagctcatcaaaacagcaggaca
gtgaagacagaaccagatagtgatggagaggacagaaaaccactgaataatggcagcagc
catctgagagactggctgggccccaagcgggagctaaacggatccttgcgagaacagtcc
ccggcaagttggatcaggactacgcctacccctatcttccggccaacaccttgccgctct
ccaccgaaatgtgttcagatggagcgccatgtcattcgtccccctccgatcagccccccg
ccggaccgtctgcccctagatgatggcaagaatcacatcatgcacagagaggtgtggatg
gcagtgttcagccacctcacacatcaagatctgtgtgtctgcatgcaggtctgcaagacc
tggaacagatggtgttgtgataaaagactgtggaccaagatcgatcttaaccggtgcaag
tcaattactcctctcatgctgagcggcattatccggagacagccggtctccctggacctg
agctggaccaacatctccaagaagcagctcagctggctaatcaacagattacctggtctg
agggttttgttgctggcaggctgctcgtgggcagctgtatctgctttatgcacatccagt
tgtcctttgctaagaactctagatgtgcagtgggtagagggactaaaggacaaccagata
agagacttactttctccgccaacagacaacagaccaggtcagttggacagtagaagtaaa
ctgaggaatgtggaggatctctgtctagctggtctggacatcacagatgagaccctaaag
ctgattataaaacacatgccatcactgtctcaaatggaccttagttactgtaaccacatc
accgaccagagcgtcaacatcctcacggcagccggcaccacgaccagagactctcttact
cacatcaacctgtcagtttgtaacaaagttacagatctgtcactaacctacttcaagcgc
tgcggaaacatttgtcacattgacttgcggtgctgcaaacaggtgaccaaagagggttgc
gagcagttcatcgcagagatgtctgtcagcgtgcagttcggacttattgaggaaaaacta
ctgagcaaactgagctag

DBGET integrated database retrieval system