Pimephales promelas (fathead minnow): 120477408
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Entry
120477408 CDS
T08155
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pprm03036
]
120477408
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120477408
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120477408
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
120477408
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_hinge
Motif
Other DBs
NCBI-GeneID:
120477408
NCBI-ProteinID:
XP_039524931
LinkDB
All DBs
Position
Unknown
AA seq
1038 aa
AA seq
DB search
MPYSLKTPTFTQARNMLPYNLLGAPDLPTDVLDCSNTGSGLMLTKPLMLKTINTEKILTA
KFNVPNHKTVACVERQLRILPSTQISRLEVYRQEEGSDDVMVLQNLERIDWTAGDTLGNL
HFRLYDEGNRLVPLLPNITSKIKVNWTAKLNAEELSQGKLPDLCVPTQAQKEHYCDVSFH
DQHSVNMSFLIVPRPDEPERLRVNLFESSVKMGEILSGNIYVEVIDQYGNKTDCLNAESV
KTLSVSADNLDKGALVVEWQASIGKLSVCGVRFMTGSLGPKELCFKYMDMMECARIEVTA
GHPAKIILLEKPEIPFQVMNGHGLDTPLVMQLCDKWGNPSPDQRIEVEMNTLYSELKIKS
SVTSQPVDSEGKACFILESISGPKGEHHLEFKGCFGKKAIPGPVIRLNLIPDPNKPDKLC
IEYDSTAKLCAGEVFPEFTVFVMAEEGGPVKNISPASLSMLLWKGIASGSRPHPAASALR
CSKRKDTEKDECFCFRDKQIPELAGKYVVQFVLALDKTKHLWSKQIELNVVPNKAMKLAP
ETPPSTPVVSNSNIRANRTLVDSLNLKIMDQYDNAAGEGIDGKVVVTVKGTGDMVVPLFE
NGENSLSYSLTNGEALITDLVLLENSPGSDGAEYILQFHPEFQLTSVTITPYSLPFRFCN
DSEHQEVISNLSKKKDRLSKTVLMYREIFETNEQLKSELECLVRDASHKINELKPELMNS
GLDISKLTSVSEIKDLINANKAILVKMENQPRRKCSILDPFKGSPHVLGKVGHLAQVEDD
DAAKVISWHILGDMDCVVTETTSAAKKIYDDTQGRQQVLPLETVFWRPNDRPLPHIRNGS
SLFRPLGNPVFVKDLLIYPEHVEGCNKVFATLLGETILIDDLDSANHYRRGVVQNKMQCP
TLLTRQGERIRSNGKFGGLQNKAPPIEKLRGQVFGAPLPKEYKHTCLQIELLQQYSGAMQ
KASDVEFEYKNHFQYLQSPQMKQKRQELKQQEEELKELEQTLARTPEKRMKRSLEPETSE
PSVPPKRIRRKPCKLADS
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgccctacagtctcaagactcccacattcacacaagccagaaacatgcttccctacaat
ttgctgggagcccctgatctgccgacggatgtgttggactgcagtaacactggctctgga
ctcatgctgaccaaaccactaatgctgaagaccataaacactgaaaaaatccttactgct
aagttcaacgttcctaaccataaaaccgtggcgtgtgtggaacgtcaactgcgcatcttg
cccagcacgcaaatatctcgtttggaggtctacagacaggaagagggctctgatgatgtc
atggtgctgcaaaatttagaacgaattgattggacggcaggagacacactaggaaacctg
cacttcagactgtatgacgagggcaatagactggttcctcttctgccaaatattaccagc
aagattaaggtgaattggaccgcaaagttaaacgcagaagaactttctcaaggaaaactg
ccagatttgtgtgttccaactcaagctcagaaagagcattactgcgatgtgtctttccac
gaccagcactcggtcaacatgtcttttttaattgtgcctcgtccagatgagcctgagcgt
ttgcgggtcaacctctttgagtcgtctgtcaaaatgggcgaaattctctcaggaaacata
tatgtagaagtgattgatcagtacgggaataaaacagactgtctaaatgctgaaagtgtg
aagactttgagtgtgtctgcggataacttggataaaggagctctggttgtagaatggcag
gccagtattgggaaattatcggtatgcggtgtccggttcatgacgggatctcttggccca
aaagagttgtgttttaagtatatggacatgatggaatgtgcacgaattgaagttactgcg
ggacatccggctaagataattctactggagaagccagagattcctttccaggtcatgaat
ggccatggcttggacacaccactggtcatgcagctgtgtgataaatggggaaatccttct
ccagatcagcggattgaggttgagatgaacactctgtactcagagttaaagataaagtcc
tcagtgacgtctcagcctgtagattccgaaggaaaagcttgcttcatattagaaagtata
agtggtccaaaaggggagcatcatttggaattcaagggatgttttggcaagaaagccatt
ccagggccggtaattagattaaatctgattcctgatcccaacaagcctgataaactctgc
attgagtatgacagcactgccaaattatgtgctggagaggtctttccagagtttacagtg
tttgtgatggctgaagagggtgggccagtaaaaaacatcagcccagcaagtctttcaatg
ctgctctggaaaggcatagcatcagggtccagaccacaccctgcagcctctgctctgagg
tgtagtaaacgcaaggacaccgaaaaggatgagtgtttctgcttcagggataagcagatt
ccagaacttgcaggaaagtacgttgtccaatttgttttggctttggacaaaaccaaacat
ctgtggagcaaacagattgaactaaacgttgttcccaataaagcaatgaaattagcccct
gagactccaccttcaactcctgttgtctctaatagtaacattcgggccaatcgcacactg
gtggacagcttgaatctaaagatcatggaccaatatgataatgctgctggtgaaggtata
gatggaaaagtggtggttacagttaaaggcactggagacatggtggttcctttgtttgag
aatggagaaaatagtttgtcatacagccttactaacggggaggctctcattactgatttg
gttcttttggagaacagtcctggtagtgatggagctgagtatattctccagttccatcct
gagtttcagctgactagtgttacgatcactccatacagcctgcctttcagattctgcaat
gattcagaacatcaggaagtcatttcaaatctcagtaagaagaaagatcgtctttccaag
actgttttgatgtaccgggaaatctttgagaccaatgaacaactgaaatctgaacttgag
tgtctggtgcgagatgcatcccacaaaataaatgagcttaaaccagagctcatgaacagt
ggcttagacatatcaaaactaacctcggtatcagaaataaaggatttaataaatgccaac
aaagcaattttggtcaagatggagaatcaacctagacggaaatgtagcattcttgaccct
ttcaaaggcagtccgcacgttctgggaaaggtaggtcatctggcacaggttgaggatgat
gatgcagcgaaggtgatctcttggcatatccttggcgacatggactgtgtggttactgaa
acaacatcagctgccaagaaaatctatgatgatacacaaggacgacaacaagtcttaccc
ctcgagaccgtcttctggagaccaaatgacaggccattgcctcacatcaggaatggctcg
tctctcttccgtccacttggaaatcctgtgtttgtcaaagatttgctcatttatcctgag
catgtagaaggctgcaataaagtttttgcaacccttcttggagaaaccatattaattgat
gatttggattctgctaatcactatcgtcggggggtggttcaaaataagatgcagtgcccc
acactcctaacgcgccaaggggagcggatacgcagcaacgggaagtttggtggtttgcag
aacaaggctccacccatcgagaaacttcgagggcaagtctttggggcaccattacccaaa
gagtacaaacatacatgccttcagatagaattattacagcagtacagtggtgcaatgcag
aaggcctctgatgtcgaatttgaatataaaaatcatttccagtacctgcagagtcctcag
atgaaacagaagcgacaagagctcaagcagcaagaggaagagttaaaagaacttgagcaa
acccttgccagaactcctgaaaaaagaatgaaacgaagcctcgagcctgaaacttctgag
ccctcagtccctcctaaacggatccgtcgcaaaccttgcaagctggcagattcatga
DBGET
integrated database retrieval system
