Pimephales promelas (fathead minnow): 120477688 Help Entry 120477688         CDS       T08155                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism pprm  Pimephales promelas (fathead minnow) Pathway pprm04115   p53 signaling pathway pprm04145   Phagocytosis pprm04148   Efferocytosis pprm04350   TGF-beta signaling pathway pprm04510   Focal adhesion pprm04512   ECM-receptor interaction pprm04518   Integrin signaling pprm04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:pprm00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     120477688   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120477688    04518 Integrin signaling     120477688  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     120477688    04148 Efferocytosis     120477688   09143 Cell growth and death    04115 p53 signaling pathway     120477688   09144 Cellular community - eukaryotes    04510 Focal adhesion     120477688   09142 Cell motility    04820 Cytoskeleton in muscle cells     120477688  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pprm04131]     120477688   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pprm00536]     120477688 Membrane trafficking [BR:pprm04131]  Endocytosis   Phagocytosis    Opsonins     120477688 Glycosaminoglycan binding proteins [BR:pprm00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120477688 SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd EGF_3 cEGF TSP1_ADAMTS TSP1_CFP_C Laminin_G_3 EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  120477688 NCBI-ProteinID:  XP_039525325 LinkDB All DBs Position Unknown AA seq 1173 aa AA seqDB search MTLRGLVLCLLLWSSESRHAEMPDDDSVFDLFELSNLHKKHHGVSLVKGPDPNSPAYKIL NPNLIPSVPELSFRDLIDSIQSERGFIFTANLKQAKRTRGSLISVERTDGTGSVFEIISN GKADTLDLVYRTASGQHVVSVEDVSVANGHWRNITVFVQEDRAQVYVGCEEINTQELDVP IQQILSPESADTASLRIAKGAAKSDRFMGVLQNVRFVFGTTLDAILRNRGCGSSPFITDV MRFENSVNGSSAAIRTDYTGHKSKDLQDICGFSCDDLTSMFSELKGLGVVVKQLSNELRQ VTADNSLIMNQIQIHKGVCLHNGIVYGDRSEWTVDSCTHCTCQNSATVCREISCPLMPCA NATVPDGECCPRCGTPSDAGAEDGWSPWSEWTHCSVTCGRGVQQRGRSCDRINSNCDGTS VQTRDCYTQECDKRFKQNGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGEDCEGD GRQTEPCQKPSCPVNGGWGPWSPWDSCSVTCGGGLQRRHRLCNSPAPKHGGKECLGDSKG SRMCNAQSCPVDGCLSNPCFAGAKCTSFPDGSWKCGECPEGYRGDGVHCQDIDECKEVPD ACFVLNGVHQCENTEPGYNCLPCPPRYSGQQPFGRGTEQAVANKQVCTPRNPCADSSHDC NKNANCIYLGIFSDIMYRCECKPGYAGNGYICGEDPDLDGWPNTDLPCVENATYHCKKDN CPDLPNSGQEDYDKDGTGDACDSDDDNDGIPDDGDNCPFIFNPRQYDQDHDQVGDRCDNC PYDSNPEQTDTDSNGEGDACAIDIDGDGILNEKDNCPYVYNTDQRDTDQDGVGDHCDNCP LEHNPDQIDSDSDNVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHD DDNDGVPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIFDVCPENFAISETDF RRFQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGYDEFNAVDFSGTFFINTD RDDDYVGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLR NALWHTGDTEGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGHIRVIMYEGKKVMADSGS VHDTTYAGGRLGLFVFSQEMVYFSDLKYECRDV NT seq 3522 nt NT seq  +upstreamnt  +downstreamnt atgactctgagaggactcgttctgtgtctgttattgtggagttccgagagcagacatgca gaaatgccggacgatgattccgtgttcgacctgttcgagctctcgaatctgcacaagaag caccacggggtgagtttagtgaagggacccgatccaaacagtcccgcgtacaagatcctg aacccgaacctgatcccctccgtgcccgagctctccttccgggacctgatcgactccatc cagagcgagagaggcttcatcttcaccgcgaacctcaagcaagccaagcgcacacgggga agcctgatctccgtggagaggaccgacggaaccgggtccgtgtttgagatcatatccaac gggaaagccgacacgctggatctggtgtaccggaccgcgagcggacagcatgtggtctcc gtcgaggacgtgagtgtggcgaacgggcactggaggaacatcacggtgttcgtgcaggag gatcgggctcaggtttatgtgggctgcgaggaaatcaacacgcaagaactcgatgttccg atccagcagatcctgagcccggagagcgcggacaccgccagcctgaggatcgctaaagga gccgccaaatcagaccgcttcatgggagttctccagaatgtgcggtttgtgttcggaacg acgctggacgcgattttacgcaatagaggatgcgggagctctcccttcatcacggacgtc atgcgctttgagaactcggtgaacggatcgagtgcggccatccgcacggactacaccgga cacaagtctaaagatctgcaggacatctgcggcttctcctgcgacgacctgaccagcatg ttctcggagctcaagggcctcggtgtggtggtcaagcagttgtccaacgagctccgccaa gtgacagcagacaacagcttaatcatgaaccagatccaaatccacaaaggcgtttgtctg cacaacgggattgtgtacggagacagaagcgagtggacggtggacagctgcacacactgc acatgtcagaactcggccactgtgtgtcgtgaaatctcctgcccgctcatgccctgcgcc aacgccacggtcccggatggcgaatgttgccctcgctgtggaacaccgagtgacgcgggt gcagaagatggctggtcgccctggtccgaatggacccattgttcggtgacctgtggacga ggcgttcagcagcgtggacgctcttgtgaccgaatcaacagcaactgtgatggcacgtcc gtccagacgagagactgttacacgcaagaatgcgacaaacgattcaagcagaatgggggc tggagccactggtctccctggtcttcctgctccgtgacgtgtggagagggtgtcatcact cgcatccgcctgtgcaactccccaacgcctcagatggggggcgaagactgcgagggagat ggccggcagaccgagccgtgccagaagccgtcgtgtcccgtgaatggaggttggggaccc tggtcaccatgggactcttgctccgtcacgtgtggtggaggacttcagcgcagacaccgt ttgtgcaacagcccggctcccaaacacggtggaaaagaatgcctgggcgactccaaagga agccggatgtgcaacgcccagtcgtgtcccgttgatggatgtctctccaacccgtgcttc gccggcgccaaatgcaccagcttccccgacggctcctggaagtgcggcgagtgtccggag gggtaccgtggggacggagtccactgtcaagacattgatgagtgcaaagaagttcccgat gcctgttttgtgctcaatggagtccatcagtgcgagaacacagaaccgggctacaactgc ctgccctgcccaccgcgctactccggacagcagcccttcggccggggaacagagcaagcc gtcgccaataaacaggtctgcacacctagaaacccatgtgcggacagcagccatgactgt aataagaatgccaactgcatttacctgggaatcttctccgacatcatgtaccgctgcgag tgtaaaccaggctatgctgggaacggttacatctgcggagaagacccagacctggacggc tggccaaacacggacctcccctgtgtggaaaacgccacctaccactgcaagaaggataac tgtcctgaccttcccaactctgggcaagaagactatgacaaagatggaactggagatgct tgtgacagtgatgatgacaatgatgggatccctgatgacggggacaattgcccgttcatc ttcaacccaagacagtacgaccaggaccacgatcaagttggcgaccgatgcgataactgc ccgtacgacagtaatccagagcagaccgacaccgacagcaacggcgagggtgacgcgtgt gccatagacatcgatggagacggcattctgaatgagaaggacaactgtccatacgtgtac aacactgaccagagagacaccgaccaggacggagtcggcgaccactgtgacaactgccct ctggagcacaaccctgaccagattgactctgactctgacaacgttggagacaagtgtgac agcaaccaagacatcgatgaggatggacatcagaacaacctcgacaactgcccctacatc cccaacgccaaccaggccgaccacgacaaggacggcaaaggagacgcctgcgatcatgac gacgacaacgatggcgtacctgacgacaaagacaactgcagactggccttcaaccctgat cagctggattcggacggtgatggccgaggtgacgtttgcaaggacgactttgaccaagat aacgtgccagatattttcgatgtttgcccggagaactttgccatcagtgaaacagatttc cgcagattccagatggttcccctcgatcccactggaacttcccaaattgaccccaactgg gtcgtccgtcaccagggcaaagagcttctgcagaccgtcaactgtgatcccggcattgct gtcggttatgatgagttcaacgccgtggacttcagcggcacgttcttcatcaacacggac cgtgacgacgactacgtcggctttgtgtttggctaccagtccagctcccgtttctatgtg gtgatgtggaagcagatcactcagacctactggtcgcatacgcccaccaaagcccagggt tactccggactgtccattaaagtcgtgaactccactacgggacccggcgaacatctcagg aacgctttgtggcacaccggagacacggaaggacaagtgcgcaccctttggcacgacccc aagaacattggctggaaggactacactgcctacagatggcacctgatccacaggcccaaa accggacacatcagagttattatgtacgagggcaagaaagtcatggctgattcaggaagc gttcatgacacgacctacgctggaggaagacttggcctcttcgtcttctctcaagagatg gtttacttctcagacctcaaatacgaatgcagagatgtataa

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