Pimephales promelas (fathead minnow): 120477688 Help Entry 120477688         CDS       T08155                                  Name (RefSeq) thrombospondin-1-like   KO K16857   thrombospondin 1 Organism pprm  Pimephales promelas (fathead minnow) Pathway pprm04115   p53 signaling pathway pprm04145   Phagosome pprm04148   Efferocytosis pprm04350   TGF-beta signaling pathway pprm04510   Focal adhesion pprm04512   ECM-receptor interaction pprm04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:pprm00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     120477688   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120477688  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     120477688    04148 Efferocytosis     120477688   09143 Cell growth and death    04115 p53 signaling pathway     120477688   09144 Cellular community - eukaryotes    04510 Focal adhesion     120477688   09142 Cell motility    04820 Cytoskeleton in muscle cells     120477688  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pprm04131]     120477688   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pprm00536]     120477688 Membrane trafficking [BR:pprm04131]  Endocytosis   Phagocytosis    Opsonins     120477688 Glycosaminoglycan binding proteins [BR:pprm00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120477688 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC EGF_3 cEGF TSP1_ADAMTS TSP1_CFP_C Laminin_G_3 EGF TSP1_CCN Laminin_G_2 Motif Other DBs NCBI-GeneID:  120477688 NCBI-ProteinID:  XP_039525325 LinkDB All DBs Position Unknown AA seq 1173 aa AA seqDB search MTLRGLVLCLLLWSSESRHAEMPDDDSVFDLFELSNLHKKHHGVSLVKGPDPNSPAYKIL NPNLIPSVPELSFRDLIDSIQSERGFIFTANLKQAKRTRGSLISVERTDGTGSVFEIISN GKADTLDLVYRTASGQHVVSVEDVSVANGHWRNITVFVQEDRAQVYVGCEEINTQELDVP IQQILSPESADTASLRIAKGAAKSDRFMGVLQNVRFVFGTTLDAILRNRGCGSSPFITDV MRFENSVNGSSAAIRTDYTGHKSKDLQDICGFSCDDLTSMFSELKGLGVVVKQLSNELRQ VTADNSLIMNQIQIHKGVCLHNGIVYGDRSEWTVDSCTHCTCQNSATVCREISCPLMPCA NATVPDGECCPRCGTPSDAGAEDGWSPWSEWTHCSVTCGRGVQQRGRSCDRINSNCDGTS VQTRDCYTQECDKRFKQNGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGEDCEGD GRQTEPCQKPSCPVNGGWGPWSPWDSCSVTCGGGLQRRHRLCNSPAPKHGGKECLGDSKG SRMCNAQSCPVDGCLSNPCFAGAKCTSFPDGSWKCGECPEGYRGDGVHCQDIDECKEVPD ACFVLNGVHQCENTEPGYNCLPCPPRYSGQQPFGRGTEQAVANKQVCTPRNPCADSSHDC NKNANCIYLGIFSDIMYRCECKPGYAGNGYICGEDPDLDGWPNTDLPCVENATYHCKKDN CPDLPNSGQEDYDKDGTGDACDSDDDNDGIPDDGDNCPFIFNPRQYDQDHDQVGDRCDNC PYDSNPEQTDTDSNGEGDACAIDIDGDGILNEKDNCPYVYNTDQRDTDQDGVGDHCDNCP LEHNPDQIDSDSDNVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHD DDNDGVPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIFDVCPENFAISETDF RRFQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGYDEFNAVDFSGTFFINTD RDDDYVGFVFGYQSSSRFYVVMWKQITQTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLR NALWHTGDTEGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGHIRVIMYEGKKVMADSGS VHDTTYAGGRLGLFVFSQEMVYFSDLKYECRDV NT seq 3522 nt NT seq  +upstreamnt  +downstreamnt atgactctgagaggactcgttctgtgtctgttattgtggagttccgagagcagacatgca gaaatgccggacgatgattccgtgttcgacctgttcgagctctcgaatctgcacaagaag caccacggggtgagtttagtgaagggacccgatccaaacagtcccgcgtacaagatcctg aacccgaacctgatcccctccgtgcccgagctctccttccgggacctgatcgactccatc cagagcgagagaggcttcatcttcaccgcgaacctcaagcaagccaagcgcacacgggga agcctgatctccgtggagaggaccgacggaaccgggtccgtgtttgagatcatatccaac gggaaagccgacacgctggatctggtgtaccggaccgcgagcggacagcatgtggtctcc gtcgaggacgtgagtgtggcgaacgggcactggaggaacatcacggtgttcgtgcaggag gatcgggctcaggtttatgtgggctgcgaggaaatcaacacgcaagaactcgatgttccg atccagcagatcctgagcccggagagcgcggacaccgccagcctgaggatcgctaaagga gccgccaaatcagaccgcttcatgggagttctccagaatgtgcggtttgtgttcggaacg acgctggacgcgattttacgcaatagaggatgcgggagctctcccttcatcacggacgtc atgcgctttgagaactcggtgaacggatcgagtgcggccatccgcacggactacaccgga cacaagtctaaagatctgcaggacatctgcggcttctcctgcgacgacctgaccagcatg ttctcggagctcaagggcctcggtgtggtggtcaagcagttgtccaacgagctccgccaa gtgacagcagacaacagcttaatcatgaaccagatccaaatccacaaaggcgtttgtctg cacaacgggattgtgtacggagacagaagcgagtggacggtggacagctgcacacactgc acatgtcagaactcggccactgtgtgtcgtgaaatctcctgcccgctcatgccctgcgcc aacgccacggtcccggatggcgaatgttgccctcgctgtggaacaccgagtgacgcgggt gcagaagatggctggtcgccctggtccgaatggacccattgttcggtgacctgtggacga ggcgttcagcagcgtggacgctcttgtgaccgaatcaacagcaactgtgatggcacgtcc gtccagacgagagactgttacacgcaagaatgcgacaaacgattcaagcagaatgggggc tggagccactggtctccctggtcttcctgctccgtgacgtgtggagagggtgtcatcact cgcatccgcctgtgcaactccccaacgcctcagatggggggcgaagactgcgagggagat ggccggcagaccgagccgtgccagaagccgtcgtgtcccgtgaatggaggttggggaccc tggtcaccatgggactcttgctccgtcacgtgtggtggaggacttcagcgcagacaccgt ttgtgcaacagcccggctcccaaacacggtggaaaagaatgcctgggcgactccaaagga agccggatgtgcaacgcccagtcgtgtcccgttgatggatgtctctccaacccgtgcttc gccggcgccaaatgcaccagcttccccgacggctcctggaagtgcggcgagtgtccggag gggtaccgtggggacggagtccactgtcaagacattgatgagtgcaaagaagttcccgat gcctgttttgtgctcaatggagtccatcagtgcgagaacacagaaccgggctacaactgc ctgccctgcccaccgcgctactccggacagcagcccttcggccggggaacagagcaagcc gtcgccaataaacaggtctgcacacctagaaacccatgtgcggacagcagccatgactgt aataagaatgccaactgcatttacctgggaatcttctccgacatcatgtaccgctgcgag tgtaaaccaggctatgctgggaacggttacatctgcggagaagacccagacctggacggc tggccaaacacggacctcccctgtgtggaaaacgccacctaccactgcaagaaggataac tgtcctgaccttcccaactctgggcaagaagactatgacaaagatggaactggagatgct tgtgacagtgatgatgacaatgatgggatccctgatgacggggacaattgcccgttcatc ttcaacccaagacagtacgaccaggaccacgatcaagttggcgaccgatgcgataactgc ccgtacgacagtaatccagagcagaccgacaccgacagcaacggcgagggtgacgcgtgt gccatagacatcgatggagacggcattctgaatgagaaggacaactgtccatacgtgtac aacactgaccagagagacaccgaccaggacggagtcggcgaccactgtgacaactgccct ctggagcacaaccctgaccagattgactctgactctgacaacgttggagacaagtgtgac agcaaccaagacatcgatgaggatggacatcagaacaacctcgacaactgcccctacatc cccaacgccaaccaggccgaccacgacaaggacggcaaaggagacgcctgcgatcatgac gacgacaacgatggcgtacctgacgacaaagacaactgcagactggccttcaaccctgat cagctggattcggacggtgatggccgaggtgacgtttgcaaggacgactttgaccaagat aacgtgccagatattttcgatgtttgcccggagaactttgccatcagtgaaacagatttc cgcagattccagatggttcccctcgatcccactggaacttcccaaattgaccccaactgg gtcgtccgtcaccagggcaaagagcttctgcagaccgtcaactgtgatcccggcattgct gtcggttatgatgagttcaacgccgtggacttcagcggcacgttcttcatcaacacggac cgtgacgacgactacgtcggctttgtgtttggctaccagtccagctcccgtttctatgtg gtgatgtggaagcagatcactcagacctactggtcgcatacgcccaccaaagcccagggt tactccggactgtccattaaagtcgtgaactccactacgggacccggcgaacatctcagg aacgctttgtggcacaccggagacacggaaggacaagtgcgcaccctttggcacgacccc aagaacattggctggaaggactacactgcctacagatggcacctgatccacaggcccaaa accggacacatcagagttattatgtacgagggcaagaaagtcatggctgattcaggaagc gttcatgacacgacctacgctggaggaagacttggcctcttcgtcttctctcaagagatg gtttacttctcagacctcaaatacgaatgcagagatgtataa

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