KEGG   Pimephales promelas (fathead minnow): 120478555
Entry
120478555         CDS       T08155                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
pprm  Pimephales promelas (fathead minnow)
Pathway
pprm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120478555 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pprm03041]
    120478555 (smndc1)
Spliceosome [BR:pprm03041]
 Complex A
  U2 snRNP components
   U2 related factors
    120478555 (smndc1)
 Complex B
    120478555 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    120478555 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2730 DUF2067 DUF7671
Other DBs
NCBI-GeneID: 120478555
NCBI-ProteinID: XP_039526422
LinkDB
Position
Unknown
AA seq 237 aa
MSEELVKQLSNYKAQLQQVEAALSTDPDNEDLRKLQKDLQEVIELTKDLLTSQPVEGTTS
TKSSETIAPTHSWRVGDHCMATWSQDGQLYEAEIEEIDSENGTAAITFAGYGNAEVLPLH
VLKEVEEGRSREEKDGKPKSKKELLAEQREYKKKKAQKKVLRMKELEQEREVQKSKWQQF
NNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNVRHLMPQ
NT seq 714 nt   +upstreamnt  +downstreamnt
atgtctgaagagttggtaaagcagttgagcaattataaagctcagctgcagcaggtggag
gcggcactctctacagatccagacaatgaagatctgcgcaaactccagaaggatctccag
gaggtgattgagttgactaaagacctgttgacatcgcagcctgtggagggtacgaccagt
acaaaaagctcagagacaatcgctcccactcacagctggagggtcggagaccattgcatg
gccacctggagccaggacggacagttgtatgaggcggaaattgaagagattgacagcgag
aatggcactgcagccatcaccttcgctggctatggtaacgcagaggtgttgccacttcat
gtgctcaaagaagtggaggagggcaggagcagggaagagaaagatggaaagcctaaatcc
aaaaaagagctgctggcagaacagagggaatataagaagaaaaaagcccagaagaaggtg
ctgcgcatgaaagagctggagcaagagagagaagttcagaagtccaagtggcagcagttt
aacaataaagcctattcaaaaaataagaaaggacaggtgaagaggagtatatttgcatct
ccagagagtgtgaatggaaaggtcggcgtcggcacgtgtggtatcgcagataaacccatg
acccagtacaatgacacttcaaagtataatgtcaggcacctaatgccccagtga

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