Pimephales promelas (fathead minnow): 120482030
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Entry
120482030 CDS
T08155
Name
(RefSeq) short transient receptor potential channel 5-like isoform X1
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pprm01009
]
120482030
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pprm04040
]
120482030
Protein phosphatases and associated proteins [BR:
pprm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120482030
Ion channels [BR:
pprm04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
120482030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
120482030
NCBI-ProteinID:
XP_039531882
LinkDB
All DBs
Position
Unknown
AA seq
1004 aa
AA seq
DB search
MTWGFFWTCVILCHRVHITPMAQLYYNKASNSPYRDRIPLQIVRAEVELSAKERAYLTAV
EKGDYAGVKQALEEADIYYNINVNCLDPLGRSGLLIAIENENLEVMELLLSHGVVMGDAL
LYAIRKEVVGAVELLLSYKKPSGEKQVPSLMMDTQFSEFTPDITPIMLAAHTNNYEIIKL
LVQRKVTIPRPHQIRCDCVECVSSSEVDSLRHSRSRLNIYRTLASPSLIALSSEDPILTA
FRLGWELKELSKVENEFRQEYEELSQQCKLFAKDLLDQARSSRELETILNHRDDHSEELD
PLECRDLAKLKLAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRRHWAVKLVTCFIIGLL
FPVFSIIYLLAPKSTLGTFIKKPFIKFICHTASYLTFLLLLLLASQHIVQTDLHVQGPPP
TIVEWLILPWVLGFIWAEIKEMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKMVAYFKY
NSSRPRVEWEMWHPTLIAEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKF
LFIYCLVLLAFANGLNQLYFYYETKASEEPNHCKGIRCEKQNNAFSTLFETLQSLFWSVF
GLLNLYVTNVKARHEFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWK
FARTKLWMSYFDEGGTLPPPFNIIPSPKSVWYLCVWLHCRLCGHGESRHEDECKHGKLKE
FTERHADNLIQNQHYQEVIRNLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVL
DLLGNRKPPRRTYSSSSDTTQQDETAEDEEGDGLGGHRSGGEGESTRSKASASFSQCYRS
NRESQFSVSALFRSMSGPARERLESNGLRKNTSHPSAFVRTFSRPKKNSLQRLGMLISRM
NGHVPDPHAGTPGVAYSVSDSVPQTSWHDPQTLGHFETEHNPTQATSRRANGRESLLLRP
PPHCASSSAQLLASGDDLCHGWTGPCDILGSSSWEQEESVTTQL
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgacatggggctttttctggacttgtgtcatcttatgtcaccgagtccacataaccccc
atggcgcagctgtactacaacaaggccagtaactccccgtaccgcgatcgcatccccctg
cagatcgtgagggcggaggtcgagctgtctgccaaggaacgagcctacctgaccgcggtc
gagaagggcgactatgctggagttaaacaggcccttgaggaggccgatatctattacaac
atcaacgtgaactgcctggacccattgggccgcagcggactcctcattgctattgagaat
gagaacctggaggtgatggagctgttgttgagtcatggcgtggtcatgggcgacgctctc
ctctacgccatccgcaaggaggtggtgggagcagtggagttactgctgtcctacaagaag
cccagtggagagaaacaggttccttctcttatgatggacacgcagttttcggagtttaca
cccgatatcacaccaatcatgttggctgcccacaccaacaactacgagataatcaagctc
ctagttcaacgaaaagtcaccataccacggccacaccagatccgctgtgattgcgtggaa
tgtgtatccagctcagaagtggacagcctgcggcactcccgttcacgtctgaacatctac
agaactcttgctagcccctctctcatcgccctttccagcgaggatcccatcctcacggcg
ttcaggctgggctgggagctgaaggagctcagtaaggtggagaatgagttccggcaggag
tacgaagagctatcgcagcagtgcaaacttttcgccaaagacctgctggatcaggcccgt
agctcccgtgagctggagaccatcctcaatcatcgggatgaccacagcgaggagctggac
ccccttgaatgtagagacctggccaagctcaagctagccatcaagtaccaccaaaaagag
tttgtagctcaacccaactgccagcagctcctggcaacactttggtacgatggtttcccg
ggttggagacgtcgtcactgggcagtgaagctcgtcacgtgcttcatcatcggcctgctc
ttccctgtcttctccatcatataccttctggctccaaagagcactctgggaaccttcatc
aagaaacctttcatcaagttcatctgccacactgcctcctacctgaccttcctcttgctc
ctcctcctcgcctcacagcatattgtgcaaacagacctgcatgtacagggacctccaccc
accattgtggagtggttgatcttaccctgggttctaggcttcatctgggcagagattaag
gagatgtgggatggaggtttcacagagtacatccatgactggtggaacctgatggatttt
gcgatgaactccctctaccttgccaccatatctcttaaaatggtggcctactttaagtac
aatagctctcgtcctcgtgtggagtgggagatgtggcaccctacgctcatcgccgaggct
ctcttcgccatcgccaacatcttcagctcgctgcgtctcatctctctgttcaccgccaac
tctcacttgggcccactgcagatttctcttgggcgcatgctgctggacatcctcaagttc
ctgttcatctactgtctggttctgctggctttcgccaacggcctcaaccagctctacttc
tactacgagacgaaggcgtccgaagagcccaaccactgcaaagggatccgttgtgagaag
cagaacaatgccttctccacgctgtttgaaacccttcagtcacttttctggtctgtgttc
gggctgttgaatctgtatgttaccaatgtgaaggctcgtcatgagttcaccgagtttgta
ggggccaccatgttcggcacatacaacgtcatctcactggtggtgctactgaacatgctc
atcgctatgatgaacaactcttaccagctcatcgctgatcacgcagacattgagtggaag
tttgctcgtaccaagctgtggatgagctactttgatgagggagggacgttaccgccaccc
ttcaacatcatacctagtccaaagtctgtgtggtacctgtgtgtgtggctgcactgccgt
ctgtgtggacacggagaatcaaggcatgaggacgagtgtaaacacggaaaactcaaagag
ttcacggaaaggcacgctgataacctcatccagaaccagcactaccaggaggtgatcaga
aacttggtaaagcgatacgtcgcagccatgatccgcagcgccaagacagacgaagggctg
acagaggaaaacttcaaggaactgaagcaggacatctccagtttccgctacgaggttcta
gacctgctgggtaaccgtaaacccccgcgccgcacatactcttccagtagtgataccact
cagcaggacgaaacagctgaggatgaggagggagacgggctcggaggacaccgaagtggg
ggtgagggagaatccaccagatccaaagcgtctgcgtctttttcccaatgttacaggagt
aaccgagagtcccaattcagcgtgtcggccctgtttaggtccatgtcggggccggccaga
gaaagactggaaagcaacggcttgaggaagaacacatcccacccctctgcattcgttcgg
accttttcacgccccaagaaaaactctttgcagcgtttgggaatgctgatctcgcgcatg
aatggacacgtcccggatccgcatgcggggaccccgggagttgcatacagcgtctcggac
agcgtaccgcaaacgtcttggcacgaccctcagacgctgggacactttgagactgaacat
aacccaacgcaggccacatctcgacgggcgaacggcagagagagtctcctcctccggccg
ccgccgcactgtgcgtcctccagcgcacagctcttggcctccggtgatgacctctgccat
ggctggacgggaccctgtgacattttaggctcctccagctgggaacaagaggagtctgtt
acgacacagctgtag
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