Pimephales promelas (fathead minnow): 120484091
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Entry
120484091 CDS
T08155
Symbol
ddx58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04622
RIG-I-like receptor signaling pathway
pprm04623
Cytosolic DNA-sensing pathway
pprm05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120484091 (ddx58)
04623 Cytosolic DNA-sensing pathway
120484091 (ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120484091 (ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pprm04054
]
120484091 (ddx58)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120484091 (ddx58)
Pattern recognition receptors [BR:
pprm04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
120484091 (ddx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
PhoH
AAA_22
SNF2-rel_dom
IstB_IS21
DUF1348
Motif
Other DBs
NCBI-GeneID:
120484091
NCBI-ProteinID:
XP_039535042
LinkDB
All DBs
Position
Unknown
AA seq
940 aa
AA seq
DB search
MYELVKENLRRFSDYIAKILRPSLIKTFMTTHFDKEMVETILSTEETSVTSAAQMLLDRM
CYLEEEGWFQAFLDTLFASDYTGLHKAIKEWDFSELEELKEHRILLERIEPSITKLIKPG
ELLTHMNDCLKLRECEEIKAVETQKGYIAASEKLVDTLLRSDKPNWFKVLKMALDACNCD
QALELLESNGGGTASMGSGSDGEADSMTTETVTSVSFTFREEAESEDMLMSTNNMTVTET
PSEFKGEYARSGERKLREYQKELTDAAEGQNTIICAPTGCGKTIVAVAICENHLKKCPGR
AKIVFLATKVDVYEQQYKLFKEHFSFTDPNIKVTGMCGDMALSVRLLIETHDIVVLTAQI
LVNALQSGEVPSLDMLSLILLDECHNTTGKHPYNNIMTRYLDTKLSSSTHSLPQIVGLTA
SVGIGTFKDRTEAENNILQLCANLDTRVIATVTKHLDELRTFVHTPEKEFFDVPRHTCDP
FIRIIENIMRNIEHLAKNTYNIESLSNIQNCEYGSQKYEQWIVSVQKSCRVIVMKNTDEE
RRICRDLYNYTEHLRKYNDALIINEDARTKDSLDFLDGFFEQVRNAGFDETERRLTALYD
SQRPQLLFLATEGQQNPKLEELRFILEEEYHNNDQTRTVLFVRTRALADAMKKWIDDTDS
LKFLMPGVLIGKGRKSNFNGSVMTPTNKKGVLDSFKSSDQSKILIATSVADEGIDIPQCN
LVLMYEYVGNVVKMVQVRGRGRAQGSRCFLISSNKDRIMKEKMNMLKEKLVEEAIVELQK
LPDLSYKVDRLQREDKARRDHVSASPQKPKKQGSYRLLCAKCKTFACSSDDLRVVQKSHH
IALDRSMFERFTTFPHKKPISFDNFTKNKKMLCGNCKHDWGLIASYLTIQDLPLLKIESF
VVQDSVTEEQFYFKKWCNVTFAIQEFDMKEITPQTWPLRD
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctggtaaaggagaatttgcggcgctttagcgattatatcgcgaagatttta
cgaccgtcacttatcaaaacctttatgacgacgcactttgataaagagatggtggaaacc
attctctctaccgaggagacgtctgtgacctccgctgcccagatgttgctggaccggatg
tgttatctagaggaagagggctggtttcaggcctttctggacaccctgttcgcctcagat
tataccggtctgcacaaggccattaaggagtgggacttcagcgagttagaggaactgaag
gagcaccggatactcctggagagaatcgaaccatcgatcaccaagctcataaagcccggc
gagctgctcacacacatgaacgactgtctcaagctcagggagtgtgaagagatcaaagcg
gtggaaacccagaaaggttatatcgctgccagtgagaaactggtcgacactctcctgcgc
tcggacaaaccgaactggtttaaggtgctgaagatggcgctggacgcctgcaactgcgat
caggcactggagctgctggagtccaatggaggcggtacggcctcaatgggcagcggatct
gatggggaggcggattccatgacgacagaaaccgtgacgtcagtgagttttacgttcaga
gaggaggctgagagtgaagacatgctgatgagcaccaacaacatgactgtcacagagaca
cccagcgagttcaaaggagaatacgcgcgttcaggcgagcgtaagctgagggagtatcag
aaggagctgacggacgctgcagaggggcaaaacaccatcatctgcgcccctacaggatgt
ggaaaaacgattgtggccgtggccatctgtgaaaaccacctgaaaaagtgtcccgggcgg
gcaaagatcgtgttcttggcaaccaaggtcgacgtctatgaacaacagtacaagcttttc
aaggaacacttttcttttactgatcccaacatcaaggtgacgggtatgtgcggtgatatg
gcgctgtcggtgcggctgctgatagagactcatgatatcgtggttctgacggcccagatc
ctggtgaacgcgcttcagagcggagaagtgccgtcactggacatgctgtcactcatcctg
ctggacgagtgtcacaacaccacggggaaacacccgtacaacaacatcatgacccgctac
ctggacaccaaactcagctccagcacacactctctgcctcagatcgtgggcctgacggca
tcggttggcatcggtacgttcaaggacagaacggaggcagagaacaatatcttacagctc
tgtgccaacctggacaccagggtcatcgccacggttaccaaacacctggatgagctcagg
acgtttgtgcacacacctgagaaagaattttttgatgttcctcggcacacctgtgacccg
ttcatcagaatcatcgagaacatcatgaggaacatcgagcatctggcgaagaacacctac
aacatcgagagcctgtcgaacatccagaactgcgagtacggctctcagaaatacgagcag
tggatcgtctcggttcagaagagctgcagagtcatagtcatgaagaacacagacgaggag
agacgaatctgcagagatctctacaactacactgaacacctgcggaaatataacgatgct
ctgatcattaatgaagacgctcggactaaagattccctcgatttcctggacgggtttttc
gagcaggtccggaacgccggcttcgacgagaccgagaggagactcaccgcgctctacgac
agtcagcgcccgcagttgctgtttttggccactgaggggcagcagaaccccaaactagag
gagctgaggttcatcctggaggaagagtatcacaacaacgatcagacgcgcaccgtcctg
ttcgtcaggacccgagccctcgccgacgccatgaagaaatggattgatgacacagattcc
ctgaagttcctgatgcccggagtcctgataggaaaaggacgaaaatccaactttaacggc
tcagtgatgactccgaccaataagaagggtgtgttggactcgttcaagagctcagatcag
agtaagatactcatcgccacctcggtcgccgatgaaggcatcgatatcccacaatgcaac
ctggttctgatgtacgagtacgtgggtaacgtggtgaagatggtgcaagttcgaggtcgt
ggccgtgcgcagggcagtcggtgtttcctgatctccagtaataaggatcgcatcatgaag
gagaaaatgaacatgctgaaggagaagctggtggaggaggcgatcgtggagctgcagaaa
ctccctgatctcagttacaaggtggacaggttgcagagagaagataaggcccggagggat
catgtcagcgccagtccccaaaaacccaaaaaacaaggcagttatcggctcctctgtgca
aagtgcaagacgttcgcgtgttcgagtgacgacctcagagtcgtgcagaagtctcatcac
atcgctctggatcgctccatgttcgagcgctttacaacttttcctcataagaaaccaata
tccttcgataacttcactaagaataagaagatgctctgtggcaactgcaaacacgactgg
ggtctcatcgcctcttacctcaccatccaggacctgccgctgttgaagatcgagagtttc
gtggtgcaggatagtgtcactgaagagcagttttacttcaagaagtggtgtaatgtgacg
tttgccatccaagagttcgacatgaaggagatcacgcctcaaacatggccgctgagagac
tga
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