Pimephales promelas (fathead minnow): 120488793
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Entry
120488793 CDS
T08155
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pprm04040
]
120488793 (scn4aa)
Ion channels [BR:
pprm04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120488793 (scn4aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
120488793
NCBI-ProteinID:
XP_039541380
LinkDB
All DBs
Position
Unknown
AA seq
1834 aa
AA seq
DB search
MASLVPRTGSYTLRKFTPESLAEIERLIQERSTREEVDGDEEEPLAPSNDLEAGNCLPMI
YGEPSKDLLNTPLEDLDPFYKAQKTFIVISKGNTIYRFSAEPALLCISPFSLVRRGAIKI
LIHSYFSMFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTFEATIKLLSRGFCIGPFT
FLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQSV
KKMVDVMILTVFALAVFALIGLQLFMGNLRQKCIRWPIPNSTIFDVYNSTMANDTTLNVT
DTFDFKAYINNEENQYFLEESLDALICGNSSDAGKCPEGYTCMKAGRNPNYGYTSYDNFG
WAFLALFRVMTQDYWENLFQLTLRAAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYDEQ
NAATLAEAIEKEEKFQRLLEQLRNQEEGSKASLASQTTQSRGSNRTGSLHSLDGDDAIKD
CNGRIVPRLVINRVSSDRELSQEKFTSDPPEEDDKSMSSKHSMDYLDQPKLSKRTASAVS
VLTATMEDLEDAQRPCPPGWYKFADIFLKWDCWAPWVIFKNWVHFVVMDPFVDLGITICI
VLNTLFMAMEHYPMSTDFEHVLSVGNLVFTGIFTAEMVFKLIALDPYYYFQVGWNIFDSI
IVTLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLSMLIKIIGNSVGALGNLTLVLA
IIVFIFAVVGMQLFGKSYKDCVCKISQDCELPRWHMNDFFHSFLIVFRILCGEWIETMWD
CMEVAGANMCLIVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSAGDDDGEMNNLQIAIGR
ITRGIDWLKAYVASMVGQILGKKPPDNKEGGVEGDLELYALNHLDEGKMADGLTNSLPLT
LTVPIARFESDVEEDFDESSDEEDREASLNDDDSSVCSTVDYRPPEPEPEPEEEEEPEPE
EPESCFTEGCVKRCTCLSVDVTEGWGKKWWNLRRTCFTIVEHDYFETFIIFMILLSSGAL
AFEDINIDRRRVIKIILEYADKVFTYVFIVEMLLKWVAYGFKTYFTNAWCWLDFLIVDVS
LVSLTANLMGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCL
IFWLIFSIMGVNLFAGKFYHCINTTTEERFPMDVVNNRSDCMALMHTNEARWVNVKVNYD
NVGLGYLSLLQIATFKGWMDIMYAAVDSREVEEQPSYEINLYMYLYFVIFIIFGSFFTLN
LFIGVIIDNFNQQKSKFGGKDIFMTEEQKKYYNAMKKLGSKKPAKPIPRPTNFIQGVVFD
FISKQFFDIFIMVLICLNMVTMMIETDDQSPEKENILYLINLVFIIIFSGECFLKMFALR
HYFFTIGWNVFDFVVVILSIAGLMLADIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGI
RTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKQAGIDDIFNFETFGGSIIC
LFEITTSAGWDGLLLPIMNSGPPDCDPDVENPGTDVRGNCGNPGMGIMFFCSYIIMSFLV
VVNMYIAIILENFNVAQEESGDPLCEDDFTMFDETWEKFDVDATQFIEYDRLFDFVDVLQ
EPLRIAKPNRLKLITMDLPIVTGDKIHCLDILLAVTREVLGDTIEMAAMKESIEAKFIMN
NPTSASFEPITTTLRRKEEERAAIAVQRTYRRRLLKRAIRHACFMRRSKRKVSSQGDEEP
PETQGLIERKMNALYGSNPELAMALELQARPMPSNGQPPEPPSVPQHRASVTYPRPQGQL
IIPVEFTREVILQSAPTTHGLCSSESATLKESIV
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggcaagccttgtccctcgcacaggctcatacacgttacgcaaattcaccccagagtcg
ctggcggagatcgaaaggctcatccaggagaggagcaccagggaggaagtagacggagat
gaggaggaaccactggcaccgagcaatgatctggaggcaggaaattgtctgcccatgatc
tatggtgaaccatcgaaggatctcctcaacacgcctctggaggatctagaccccttctat
aaagcacagaaaacgtttattgtcataagcaagggaaacacaatctacagattttcagct
gaaccagcattgctttgtatcagtccttttagtcttgtcagaagaggagccatcaaaatt
cttatacattcatattttagtatgttcatcatgatcaccatcctttccaactgcgtgttc
atgacaatgagtaaccctccagcctggagtaaaacagtcgagtatgtttttactggtata
tatacctttgaagcaacaatcaaacttttgtcacgaggcttctgcataggacctttcaca
ttcctacgtgatccatggaactggcttgatttcatggtgattagcatggcgtacatcaca
gagtttgtagaccttggtaatgtgtcagcactgaggacgtttcgtgtgcttcgagctctc
aaaacaatcacagttatccctggtttgaaaaccattgtcggggctttgattcagtcagtc
aagaagatggtagatgtaatgattttgactgtctttgcactggctgtatttgccctcatt
ggcctgcagctgttcatgggaaatctgcgtcagaagtgcatccgttggcccattcccaac
agcaccatctttgatgtctacaattccaccatggccaatgacaccactctcaacgtcaca
gatactttcgatttcaaagcatacataaacaatgaagaaaaccaatactttttggaagaa
agtttggatgctttaatatgtggtaacagctctgatgctgggaagtgccctgaaggatac
acttgtatgaaggctggacgaaacccaaattatggctacaccagctatgacaactttggc
tgggcctttcttgccctcttcagagtcatgactcaggactattgggagaatctcttccag
ttgacccttcgtgctgctgggaagacctacatgatcttctttgtggtggtcatcttcctg
ggctctttctacctcatcaatctgatcttggctgtggttgcgatggcatatgatgagcag
aatgcggccaccttggctgaggccattgagaaagaagagaagtttcaaagattgctagag
cagctcaggaaccaagaggaaggcagtaaagcatctctggccagccagacaactcaaagt
cgagggtcaaataggactggttccctgcacagtcttgacggcgatgatgccataaaggac
tgtaatggccggattgtgcctcgcctcgtcatcaacagagtctcctctgacagagagtta
tcacaagagaaattcacaagtgatccgcctgaagaggatgacaagtccatgagctccaaa
cacagcatggattacctggaccagcctaagctctccaagagaacagctagtgccgtcagt
gtgctcactgccacgatggaggatttggaagatgctcaaaggccttgtcccccgggctgg
tataaattcgctgatattttccttaaatgggactgctgggccccctgggtcatctttaag
aattgggttcattttgtagtgatggacccatttgttgatctaggtatcaccatctgcatt
gtgctcaatacacttttcatggccatggagcactaccccatgagtacggatttcgaacat
gttctctcagtgggcaacttggtatttacaggaatcttcacagctgaaatggtgttcaag
cttattgctttggacccctactactatttccaggtgggctggaacatttttgacagcatc
attgtcacactcagtctggtagagttgggactggccaatgttcagggattgtccgttctt
aggtccttccgtttgctacgtgtcttcaaactcgctaaatcttggcccacccttagcatg
ctgatcaagatcatcggcaactcagtcggtgccctggggaacctaacgcttgtcctggcc
atcatcgtcttcatcttcgccgtggtgggcatgcagctctttggcaagagttacaaggac
tgtgtttgtaagatctctcaggactgcgagcttccccgctggcacatgaacgacttcttc
cactcttttctcatcgtcttccggatcttgtgtggagagtggatcgagaccatgtgggac
tgcatggaggtggcgggagcaaacatgtgtttgattgtcttcatgatggtcatggtcatt
ggaaaccttgtggtgctgaatctgttcctggccctgctgctcagctccttcagtggggat
aacctgtctgcaggtgatgacgatggtgagatgaacaaccttcagatagccattggtcgc
atcaccaggggtatagattggctcaaagcctacgtcgccagtatggtgggacagattcta
ggaaagaagcctcctgacaataaggagggaggagtggaaggagacctagaactatatgct
ttaaaccacctggatgaggggaaaatggcagatggcttgaccaactctttgcctctgaca
ctgactgtgcccattgctcgttttgagtccgatgttgaagaggacttcgatgaatcttct
gatgaggaggacagagaggcctctcttaatgatgacgactcttcggtttgcagcacagtg
gactaccgacctccagaacctgagcctgagcccgaagaggaagaagaacctgagcctgaa
gagccggagtcctgtttcacagagggttgtgttaagcgctgcacatgtttgagtgtagac
gtcactgaaggctgggggaaaaagtggtggaacctgcgaagaacatgcttcaccatcgtt
gagcatgactactttgagaccttcatcatctttatgatcctccttagcagtggagcactg
gcttttgaggatatcaacattgaccgtcgcagagtgatcaagatcatcctggaatatgct
gataaagtcttcacatacgttttcattgtggagatgttgctgaagtgggtggcatacggt
ttcaagacctacttcactaatgcatggtgctggctggacttcctcattgtggatgtgtct
ctggtcagtttaacagccaatttaatgggctattctgagttgggaccaatcaaatctctc
agaacactcagggctcttcgaccccttcgagctctgtcgagatttgagggaatgagggtg
gtggtgaacgcactggttggtgcaattccctccatttttaatgtgctcttagtgtgtctg
atattctggctcatcttcagcattatgggagttaatctatttgctggaaagttctaccac
tgcatcaacaccaccacagaggaacgctttcccatggatgtggtcaacaacaggagtgac
tgcatggcactgatgcacaccaatgaggcgcgctgggttaatgtcaaggtcaactatgac
aacgtgggtcttggctacctctctctactgcaaattgctacattcaaaggctggatggat
atcatgtatgctgcagtggattctagagaggtggaagagcagccatcatatgagatcaat
ctttacatgtacctatattttgttattttcatcatttttggctcctttttcactctcaac
ctcttcattggtgtcatcattgacaactttaatcagcaaaagtcaaagtttggaggaaaa
gacattttcatgacagaggaacagaaaaagtactacaatgccatgaagaaattgggttcc
aaaaaacctgcaaaacctatccctcggcctacgaattttatccagggtgtggtgtttgac
ttcatctcaaaacagttctttgacatctttatcatggtgcttatttgcctcaatatggtg
accatgatgatagagacagatgaccagagtcctgagaaagagaatatcctatacctgatc
aatttggtgttcatcatcatcttctcaggggaatgctttcttaagatgtttgcgctcaga
cattacttcttcactattggctggaatgtctttgattttgttgtggtcatcctttctata
gcaggtctgatgttagcggacatcattgagaagtactttgtgtctcccaccttgttccgt
gtcatccgacttgctaggatcggccgtgtgttgcgtctcatcagaggtgcgaaaggcatt
aggactcttttgtttgccttgatgatgtcacttcctgcccttttcaatattggactgctt
ctgttcctcatcatgttcatcttctcaatttttggcatgtctaactttgcctatgtgaaa
aagcaggcaggcatcgatgacatcttcaactttgaaacatttggcggtagcatcatctgt
ctgtttgagatcacaacctcggcaggctgggatgggcttctgctgcctattatgaacagc
ggccccccagattgtgaccctgacgtagagaaccccggtacagacgttcggggaaactgc
gggaatcctggcatgggaatcatgtttttctgcagttacattatcatgtcgttcctggtg
gttgtgaacatgtacattgccatcattcttgagaacttcaatgttgctcaagaggagagt
ggcgacccactctgcgaggatgacttcacgatgttcgacgagacatgggaaaagtttgac
gttgatgctactcagttcatcgaatacgaccgcttgtttgactttgtcgatgtcttgcag
gaacctctgcgaattgccaaacccaaccgcctcaaactaatcaccatggatctgcccatt
gtaaccggagacaaaatccactgtcttgatattcttctggcagttacccgcgaggttctg
ggtgacaccatcgagatggctgccatgaaggagagcattgaagccaagttcataatgaac
aaccccacatctgcctcatttgagccaatcaccaccactctcaggaggaaggaggaagag
cgagcagccattgcggttcaacgaacataccgtagacgtctcctcaaacgtgctatccga
catgcctgctttatgcgtcgctcaaagagaaaagttagtagtcagggcgatgaagaacct
cctgaaacccaaggtctaattgaaaggaaaatgaatgccttgtatggtagcaacccagaa
cttgccatggctcttgagttgcaggctaggcctatgccgtccaatggacagccacctgag
cccccttcggtcccgcagcatagagcatcagtgacctatcctcggccgcagggacaactc
ataatcccagtggagttcacaagggaggtgatcctccaatctgcacccacaacgcatggc
ctgtgcagttcagagagtgcaacattaaaagagtcaatagtataa
DBGET
integrated database retrieval system
