Pimephales promelas (fathead minnow): 120489369
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Entry
120489369 CDS
T08155
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120489369 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120489369 (eftud2)
Spliceosome [BR:
pprm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120489369 (eftud2)
Complex C
U5 SnRNP specific factors
120489369 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
120489369
NCBI-ProteinID:
XP_039542061
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEELDAEDREADEADEEDDDEDQAEVDEEGGGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKLKRFTLMEQELPATVYDMEFLAD
LMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDSDLRYTDILFTEQERGVGI
KSAPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSAVRLSDGIVLFIDAAEGVMLNTER
LIKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDESVIVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYMEFSKRLWGDIYFNPKTRKFTKKAP
NSSSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHVPSPQGGAKAKIEHTYTGGLDSDLGETMSECDPDGPLMCHTTKM
FSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYSLEDEEDSQICTIGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctttatgatgagttcggaaactatataggaccggagctagactctgat
gaagatgaggaactagatgcagaggaccgggaggctgatgaggcagatgaggaggatgat
gatgaagaccaggctgaggttgatgaggagggtggtggtatggaggtggttttgcatgag
gataaaaagtattatcccacagctgaggaagtttatggtcctgaggtggagaccattgtc
caagaagaagatacacaaccattgacagagcccatcataaaacccgtaaagttgaagcgg
tttactctgatggagcaggagcttccagccacagtctatgacatggagtttcttgctgat
ttaatggacagctcagaactgatcagaaatgtcactttgtgtggacacttacaccatggc
aagacatgcttcgtggactgcctcattgaacagactcatcctgaaatccgcaagagagat
gactctgatctacgatacacagatatcctcttcacagagcaagagaggggagttggcatc
aagagtgctcctgtgaccatggtgctacctgactcacggggcaaatcctacctcttcaac
attatggacacgccaggtcatgtgaatttctctgatgaagtgacatctgcagtcagactg
tccgacggcattgtgctttttatcgatgctgccgagggagtgatgctgaacactgagcga
ctgattaagcacgcagtgcaggagaggttggccatcactatctgtattaataaagtagat
cgtctgatcgtggagctcaagctgccgcctactgatgcctactacaaacttcgccacatt
gtggatgaggtcaatggattgctgagcacatactccacagatgagtctgtgattgtgtct
cccctgttgggaaatgtgtgttttgcttcctcgcaatacagcatctgcttcactcttggc
tccttcgccaaaatctattcagacacctacggtgatattaattacatggagttttctaaa
agactgtggggagacatttacttcaaccctaaaacgaggaaattcacaaagaaagccccc
aacagcagctctcagcgcagctttgttgagtttgtgctggagcccttgtacaagattctt
tctcaggtggtgggggatgtggatacgtctctgcctcgtgtcttggatgagctcggcatt
catctgaccaaagaggagttaaagctcaacatcagacctctgctacgtctcgtctgtaat
cgcttctttggagagtttacaggctttgtggacatgtgtgtgcaacacgtaccttctcct
caggggggtgccaaagccaagatagagcatacctacacagggggactggattcagacctc
ggagagacgatgtctgagtgtgaccctgatggtccactgatgtgccacaccactaagatg
ttcagcacagatgacggcgttcagtttcacgcgtttggtcgagtcctgagtggaaccctg
caggcgggccagccggtgaaggttctgggagagaactacagcctcgaggatgaggaggac
tcacagatctgcactattggacgcctgtggatttctgtcgctaggtaccagattgaagtg
aatcgtgttcctgctggtaactgggtgctgatcgagggctgcgaccagccgatcgttaaa
acggccacaatcacagagccccgtggaaatgaagaggctcagatcttcaggccattgaag
tttaacactgcgtcagtgataaaaatagcggtggagccagtcaatccctcagaactgccc
aagatgttggatggactcagaaaagtcaacaagagttatccttctcttacaacaaaggtg
gaagagtcaggtgaacatgtaattcttggcacaggtgagctgtacctggactgcgtaatg
catgacctgcgaaagatgtactctgagattgatatcaaggtagctgaccctgtggtgact
ttctgcgagactgtggtggagacatcctccctgaagtgttttgctgaaacacccaataaa
aagaataagatcaccatgattgccgagccgttggagaagggtctagccgaagacattgag
aacgaggtggtgcagatcacatggaacaggaaaaagttgggagagtttttccagaccaag
tatgactgggatttgctagcagctcgttccatttgggcttttggacctgacacgactggg
cccaacatcttagtagacgatactttgccctcggaggtagataaagctctcctcggctca
gtgaaggacagcattgtacagggcttccagtggggcacacgcgagggtcctttatgtgat
gaaccaatccgcaacgtgaagtttaagatcctagatgctgtgatcgcacaggaaccgctg
cacagaggaggaggacaggtcatccctacagctcgcagagtcgtctactctgcctttctc
atggccacgcccaggctgatggagccttattactttgtggaggttcaggctcctgctgac
tgcgtttctgccgtgtacacggtcctggcacgcaggagaggtcatgtgacgcaggatgcc
ccaatccctggctctcctctctacaccatcaaggctttcattccagcgattgactcgttt
ggttttgaaactgatctccgcacgcacacgcagggccaggcctttgcgctcagtgtgttc
caccactggcagattgttcccggtgatcctctggataagagcattgtgattcgtcctcta
gagcctcagccggcccctcatctagccagagagtttatgatcaaaacccgcaggcgcaaa
ggtttgagtgaggacgttagcatcagcaagttcttcgatgaccctatgttgttggagctg
gccaaacaagatgtggtgctcaactacccgatgtga
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