Pimephales promelas (fathead minnow): 120492295 Help Entry 120492295         CDS       T08155                                  Symbol slit1a Name (RefSeq) slit homolog 1a   KO K06838   slit 1 Organism pprm  Pimephales promelas (fathead minnow) Pathway pprm04517   IgSF CAM signaling Brite KEGG Orthology (KO) [BR:pprm00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04517 IgSF CAM signaling     120492295 (slit1a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pprm00536]     120492295 (slit1a) Glycosaminoglycan binding proteins [BR:pprm00536]  Heparan sulfate / Heparin   Axon guidance molecules    120492295 (slit1a) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  LRR_8 LRR_4 EGF LRR_5 Laminin_G_2 hEGF Laminin_G_1 LRRNT LRR_1 LRRCT EGF_TEN LRR_9 LRR_14 EGF_Teneurin EGF_DL_JAG EGF_C8A_B_C6 EGF_3 LRR_NXF1-5 Motif Other DBs NCBI-GeneID:  120492295 NCBI-ProteinID:  XP_039546443 LinkDB All DBs Position Unknown AA seq 1525 aa AA seqDB search MSGGYGYSARLVEVCVWILLACEAAAACPALCTCSGTTVDCHGLGLRTMPRNIPRNAERL ELNGNNLTRINRNDFSGLKYLRVLQLMENQIGTVERGAFDDMRELERLRLNRNQLHQLPE LLFQKNAALSRLDLSENFIQAIPRKAFRGATDIKNLQLDKNHISCIEDGAFRALRGVEVL TLNNNNISGIPVSSFNHMPKLRTFRLHSNNLNCDCNLAWLSQWLRERPTIGLFTQCTSPA PLRGINVAEIQKHEFSCSGQSESAVGQSCSLATGSCPAVCTCTNNIVDCRGKGLTAIPAN LPDSMTEIRLEQNGIKSIPPGAFSPYKKLRRIDLSNNQISEIAPDAFLGLRSLNSLVLYG NKITDLPRGVFDGLYALQLLLLNANEIHCLRANTFTDLQNLSLLSLYDNKIQTLAKGTFS SLRVIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCTSPRRLANKRIGQIKSKKFR CSAKEQYVIPGTEDTRLNTDCNNDPVCPAKCRCEANVVDCSNLRLNRIPEHIPASTTELR LNNNEITTIEATGVFKTLSHLKKINLSNNKISEIEDGAFEGASSVSELHLTANQLDSAHS GMFRGLDGLRMLMLRNNRISCIHNDSFTGLHNVRLLSLYDNTLTSITPGAFDTLQSLSTL NLLANPFNCDCHLSWLSVWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPDFQCGDDREEA SCSPPAQCPSECSCQEAVVRCSNKHLHLLPKGIPRNVTELYLDGNQFSAVPKELSNYKNL QLVDLSNNKISSLTNSSFSNMSQLTTLILSYNALRCIPTLAFRGLRSLRLLSLHGNDISE LPDGIFNDAASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCIGPHGMLGKLLLT TPAKRFECQGEVDTAILAKCNPCMSSPCLNRGRCEADPTDGYRCICPEGFKGKNCETVSN ACVSEPCKNGGTCHVSGEEEQGYSCSCAAGFEGPACDTDTDECNDNDCQNGATCIDGINN YTCLCAPFYTGEMCEDMEDMCAPTRSPCKHQSTCFITVSGPKCICAPGYVGDDCSVNYDD CQDHRCQNGAQCVDELNGYSCVCPKGFSGQLCEVPPTPRSLCELADCQNNAPCVERGGHP LCQCLAGFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAEDNGILLYNGDN DHIAVEIDEGHVKVSYDPGSQKSHAIYSTETINDGQFHTVELVTFDQMVNLSIDGGIPTT MDSFGKVQPLRGEAPLYVGGMPVSVHPTAPRVWQIQNGSSFHGCIQNLYINNELQDFTKT QMKPGVVPGCEPCRKIYCLHGICQPNTATGPVCHCQPGWSGQHCDQPSANPCLGSKCVHG RCIPMDMQSYRCECQEGFHGALCNQLEELFNPCRKLQCKHGHCQISDTGDAYCHCEVGYS GELCDKESECHGEPVRDFYQVQRGYAICQTTRMVSWVECSGVCESGSCCASQRMKRRTHT FECSDGSSFSEEVEKTVKCGCAGCM NT seq 4578 nt NT seq  +upstreamnt  +downstreamnt atgagtggaggatacggatactccgcgcggctggtggaggtgtgtgtgtggatcctgctg gcgtgtgaagcggccgcggcgtgtccggcgctctgcacgtgcagcggcaccactgtggac tgccacgggctcgggctcagaaccatgcccaggaacatcccccgaaacgcggagaggctg gaactgaatggaaacaacctcacacgcatcaacagaaatgacttttctggactcaagtat cttcgagttttgcagctgatggagaaccagataggaacggtggagcgaggagcgttcgat gacatgagagagctggagagactacgtctgaacaggaaccagctccaccagcttccagag ctcctgttccagaagaacgccgctctgtcccgactagacttgagtgagaacttcatccag gcgattccccgaaaggcgttcagaggagcgacggacatcaagaaccttcagttagacaag aatcacatcagctgcatcgaggacggcgctttccgtgcgttacgtggagtcgaagttcta acactgaacaacaacaacatcagcggcattccagtgtcgagcttcaaccacatgcccaag ctcaggaccttccgtttacattccaacaacctgaactgtgactgcaatctggcctggttg tcgcagtggttgcgtgagcgtccgaccatcggcctgttcacccagtgcacttctcccgct ccgctgcgagggattaacgtagccgagatccagaaacacgagttcagctgttcaggtcag tctgagagcgcggtgggccagtcgtgtagtttggccacgggctcgtgtccggccgtctgc acctgcactaataacatcgtggactgccgagggaaaggactgacggcgatcccggctaac ctgcccgacagcatgacggagatacgactggaacagaacggcatcaagtccatccctcct ggagccttctctccttataagaaactgcgccgaatagatctcagcaacaaccagatctcg gagatcgctcccgacgccttcctgggtctgcgctcgctgaactcactggttctgtacggg aacaagatcacggatcttcccagaggagtgtttgacggactctacgccctccagctgctg cttttgaatgcaaacgagatccactgtcttcgtgcaaacaccttcacggacctgcagaat ctctcgctgctttctttatacgacaacaagatccagacgctggccaagggcaccttctcc tcgctgcgcgtgatacagacacttcatctggcgcagaacccgttcatctgtgactgtaac ctgaagtggctggcggattacctgcgatcgaaccccatcgagaccagcggcgcccgctgt accagccctcgccggctcgccaacaagcgcatcggccagatcaagagcaagaagttccgc tgctccgccaaagagcagtacgtcatcccgggaaccgaggacacgcgtctgaacaccgac tgtaataatgacccggtctgtcccgccaagtgccgctgcgaggcgaacgtagtggactgc tccaacctgaggctgaaccgcatccccgaacacatcccagcatccaccactgaactccgt ctcaacaataacgagatcacgacgatcgaagccacgggtgttttcaagacgctgtctcac ctgaagaagataaacctgagcaacaataagatctctgagatcgaggacggggcgtttgaa ggggcgtcttcggtcagtgaactgcacctgacggcgaaccagctggactcggctcacagt gggatgtttcggggtctggacggcctgcgcatgctaatgctgcggaacaatcgcatcagc tgcattcacaacgacagcttcacaggcttacacaacgtgcgtctgctgtccctgtacgac aacacgctgaccagcatcaccccgggagccttcgacacgctgcagagcctctccacccta aacctgctggccaacccgttcaactgcgactgccacctgtcctggctgagcgtctggctg aggagccgcaagatcgtgacggggaaccctcgctgccagcggcccgccttcctcaaagag atccccctgcaggacgtcgctcttccagacttccaatgcggagacgatcgcgaggaggcg agctgctccccgccggcccagtgtcccagcgagtgctcctgtcaggaggcggtggtgcgc tgcagcaacaaacacctgcacctcctgcccaaaggcattcctcgaaacgtcaccgagctg tacctggacggaaaccaattcagcgcagtgccaaaggagctgtcaaactacaaaaacctg cagctagtagacctgagtaacaacaaaatcagctccttgaccaactcttcgttctccaac atgagtcagctcacgaccctgatcctgagctataacgctctccgctgtatcccgactctc gccttcaggggtctccggtctctccgcctgctgtctctgcacggcaatgacatctcagag ctgcccgatggcatcttcaacgacgctgcgtcactgtcacacctggccatcggtgcgaac cccctgtactgcgactgccgcctgcgctggctctccgactgggtgaagaccggatacaag gagcccgggatcgcgcgctgtatcgggccgcacggcatgctgggaaaactgctgctcacc acaccggccaagaggttcgagtgccaaggtgaagtggacactgccatactagcgaagtgt aacccgtgcatgtctagcccctgcctgaaccgcggccgctgcgaggcggatccgacggac ggatacaggtgcatctgtcctgaggggttcaagggcaagaactgtgagacggtgagtaac gcttgtgtcagcgagccctgtaagaacggagggacgtgccacgtgtccggggaagaggag caaggctatagctgttcatgtgctgcaggctttgaaggtcccgcgtgtgacaccgacact gacgagtgtaacgataacgactgtcagaacggagcgacctgcatagacgggatcaacaat tacacatgtttatgtgcccctttttacacaggggagatgtgtgaggatatggaggatatg tgcgctcctactcgcagtccctgcaagcaccagtccacctgcttcatcaccgtctccggc ccaaagtgtatatgtgcccctggttatgtgggagacgactgcagcgtgaactatgatgac tgtcaggaccacaggtgtcagaacggggcgcagtgtgtggacgagctcaacggatactcc tgtgtgtgtcccaagggcttcagtggacagctttgtgaagtgccacctactccgcgttct ctctgcgagttggccgactgccagaacaatgccccctgtgtggagcggggcgggcatcca ctgtgccagtgcctggcagggtttggtggaccacgctgtgaaaagttggtcagtgtcaac tttgtggaccgagactcctacctgctactgagtgacctgaagaactggcctcaagccaac atcacgctacaggtgtccactgcagaagataatggcattcttctgtacaatggagacaat gaccacattgctgtggagattgatgaaggtcatgttaaagtcagctatgaccctggcagc caaaaaagtcatgcaatctacagtactgagaccatcaacgatggtcaattccacactgta gaactggtgacctttgaccagatggtgaacctttccatagatggtggcatcccaacaacc atggacagctttggtaaagtgcagcccttgaggggagaagctccactatatgtgggaggc atgccggtcagcgtccaccccacagctcctcgtgtatggcagatccaaaacggctccagt ttccacggttgcattcagaacctttacatcaataatgagctacaagacttcaccaaaacc cagatgaaacctggtgtggtgcccggatgtgagccctgccgaaagatatactgcctgcac ggcatctgccagcccaacactgccacgggccccgtgtgccactgccagcctgggtggagc gggcaacactgcgaccagccttcagccaacccctgcctgggcagcaagtgtgttcatgga aggtgtattccaatggacatgcagtcgtaccgttgtgaatgccaggagggttttcatgga gcgctgtgtaaccagctggaagaactcttcaacccatgcagaaaactgcagtgcaaacac ggccactgtcagatctctgacaccggagatgcctactgtcactgcgaggtgggctacagc ggggagttatgcgacaaggagtccgagtgccacggggagccggtgcgggacttctaccag gtccagcggggttacgccatctgtcagaccacacgcatggtgtcgtgggtggagtgcagt ggcgtctgcgagtccggctcctgctgtgccagccaacgcatgaagaggagaacacacacc ttcgagtgcagcgacggctcgtccttcagcgaggaggtggagaagaccgtcaagtgtggc tgtgcggggtgcatgtag

DBGET integrated database retrieval system