Pimephales promelas (fathead minnow): 120493747 Help Entry 120493747         CDS       T08155                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism pprm  Pimephales promelas (fathead minnow) Pathway pprm04115   p53 signaling pathway pprm04145   Phagosome pprm04148   Efferocytosis pprm04350   TGF-beta signaling pathway pprm04510   Focal adhesion pprm04512   ECM-receptor interaction pprm04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:pprm00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     120493747 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     120493747 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     120493747 (thbs1b)    04148 Efferocytosis     120493747 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     120493747 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     120493747 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     120493747 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pprm04131]     120493747 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:pprm00536]     120493747 (thbs1b) Membrane trafficking [BR:pprm04131]  Endocytosis   Phagocytosis    Opsonins     120493747 (thbs1b) Glycosaminoglycan binding proteins [BR:pprm00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    120493747 (thbs1b) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C TSP1_ADAMTS EGF_3 Laminin_G_3 cEGF TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  120493747 NCBI-ProteinID:  XP_039548504 LinkDB All DBs Position Unknown AA seq 1171 aa AA seqDB search MKSSAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI LNPDLIPPVPESAFRDLIDSIHAERGFLLLVNFKQFKHTRGSLLTVEKNDGSGPIFEIVS NGKANTLDIVFSTENKQQVVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA SIQSILTQETPGVASLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSIMTDII TLDNPINGSRPAIRTDYTGHKTKDLQMICGFSCEELAGMFKELKGLGVVVQKLSKELSKV TDEKNMLMNHIGIHAGVCIHNGIVHKNKDEWTVDDCTECTCQKSATVCRKISCPLIPCAN ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ TRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMEGKDCQGEGR QTERCEKSPCPINGGWGPWSPWDICSATCGGGVQNRKRLCNNPVPKYDGKDCLGHAKASQ VCNKQACPIDGCLSSPCFEGAQCTSFPDGSWQCGKCPPGYTGNGINCKDINECEDVPDAC FEFNGVHRCENTVPGYNCLPCPTRYTGPQPFGRGVEDAAAKKQVCTPRNPCLDGSHDCNK NARCNYLGHFSDPMYRCECRPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCP NLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPLIFNPRQYDYDRDEVGDRCDNCPY NSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNVDQKDTDLDGVGDQCDNCPLE HNPDQLDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDD NDGIPDDKDNCRLVFNPDQLDSDGDGRGDACKDDFDQDNVLDIYDVCPENFDISVTDFRK FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERD DDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNA LWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIY DKTYAGGRLGLFVFSQEMVYFSDLKYECRDV NT seq 3516 nt NT seq  +upstreamnt  +downstreamnt atgaagtcaagtgcaatctttttgctactgatgctttggaactgcgagagcgcgagagtc gcagaaagtcgagacgacaacagtgtttacgatctgtttgagctcgtccaagtgcccagg aaaaaccacggggtcaccctggtgaaaggcgacgacccgtacagccccgcctacaagatc ctgaaccccgacctgattcccccggttcccgagagcgccttcagggacctaatcgattcc attcatgccgagagaggatttctgctcctggtcaatttcaagcagttcaagcacacacgg ggaagccttctgaccgtggaaaagaatgacggctccggacccatttttgaaatcgtttcc aacggaaaagccaacactctggacattgtgttttccactgaaaacaagcaacaggtcgtg tccatcgaggaagcggatttggcggtgggacactggaaaaacatcactcttttcgtacag gaggacagggttcagttctatgtgggatgtgaagaggtgaacactgcggagctcgatgct tcgatccagtcgatcctcactcaggagaccccaggtgtggcgagcttgaggatcggcaag ggcgcagtaaaggacaggtttatgggggttttgcaaaacgtgcgctttgtgttcggaacc acactggatgcgattctgaggaataaaggatgccaaaactcaattatgactgatatcatc acccttgacaatcccataaatggatccagacctgcaatcaggactgattacactggccac aaaacaaaagatctacagatgatttgtggcttctcttgtgaggaactggctggcatgttt aaggaactgaaaggtcttggtgtggtggtgcaaaaactgtccaaagaactcagcaaagtg acagatgagaaaaacatgctcatgaatcacattggcattcatgctggtgtgtgtattcac aatggaatagtgcacaaaaacaaggacgaatggacggtggacgattgcacagagtgcact tgccagaaatctgcaacggtgtgccgcaagatttcgtgtcccctaatcccgtgtgcaaac gccacagtgcctgatggggaatgctgccctcgttgtggaaccccgagcgactccgctgag gatggctggtccccctggtctgaatggacccattgttctgtgtcttgtggaaggggcatt cagcagcgcggccgctcttgcgaccgcatcaataacaactgcgagggcacgtcggtgcag acgagagactgctacctccaggagtgtgacaagcgctttaagcaagatggcagctggagt cactggtcaccttggtcctcctgctcggtcacctgtggtgctggcgttatcactcgcatt cgtctttgtaactctccaacacctcaaatggaaggcaaagattgccagggtgaaggtcgg caaactgagaggtgtgagaaatcaccatgtccgatcaatggtggctggggaccatggtca ccctgggacatatgctccgctacctgtggtggtggtgtccaaaatcgtaagcgtctttgc aataatccagtgcccaagtatgatggcaaagactgcctgggacacgcaaaagccagccag gtttgcaacaaacaagcctgtccaattgatggatgtctttcaagtccatgctttgaagga gcccagtgtacaagcttcccagatggctcctggcaatgtggaaaatgccccccaggatac actggcaatgggatcaactgcaaggatatcaatgagtgtgaggatgtccctgatgcctgc tttgaatttaatggagtccataggtgtgagaacacagtgccgggctacaactgcctgcca tgccccactcgctacaccggtccacagccatttggtcgaggagtggaggacgctgctgcc aagaaacaggtgtgcacgcctcgtaatccctgcctcgatggaagccacgactgcaataag aacgctcgctgcaactacctgggccatttctcagaccctatgtaccgctgtgagtgcaga cctggctacgctggaaatggacacatttgtggagaggacactgatcttgatggctggcct aatgctgatcttgtttgtgtcgagaacgcaacttatcactgcaaaaaggacaactgcccc aatcttcccaactctgggcaagaggactacgacaaggatggaattggtgatgcttgtgat gatgatgatgatgacgacggcattcctgatgacagggacaactgcccactcatcttcaac ccaagacagtacgactatgatcgcgatgaagtgggagaccgctgcgataactgtccgtac aacagtaacccagaccaaactgacactgacaacaatggtgaaggtgacgcctgtgctgtg gacattgatggagacggtattttgaatgagaacgataactgcccatatctatacaacgtc gaccagaaagacactgatctcgatggagttggtgaccagtgtgacaactgccctctggaa cacaacccagatcagctcgactctgattcggaccgtgttggagacaaatgtgacagcaac caggatatcgatgaggacggtcaccaaaacaaccttgacaactgcccgtacatccccaat gcgaaccaggctgaccacgacaaggatggtaaaggagatgcctgtgactacgatgatgat aatgatggcatccctgatgacaaagacaactgcagattggttttcaatccagatcaactg gattctgatggcgacggacgtggcgatgcctgtaaagacgactttgaccaggacaatgtc ctagatatctatgacgtgtgtcctgagaactttgacattagtgtaacagacttccgcaaa ttccagatggtacctctggatcccaagggcacttctcagattgaccccaactgggtggtg cgccaccaaggaaaagaactggttcagacagtcaactgcgaccccggcattgctgttggt tttgatgaattcaattcagtcgacttcagtggaacattcttcatcaacacagagagggac gatgactatgccggctttgttttcggataccaatccagctctcgcttctatgtggtcatg tggaaacagatcacacagacctactggtccagcacaccaaccaaagcacagggttactcg gggctatcaatcaaagtggttaattccaccacagggccaggcgagcatctgaggaacgcc ctttggcacaccggagacaccccaggacaggtgcgcacactgtggcatgacccgaagaac gtgggatggaaggacttcactgcttacagatggcacctgactcatagaccaagaactgga catataagggtggtcatgtatgaaggcaaaaagatcatggcagattctggcagaatttat gacaaaacgtatgcaggcggaagactgggtctctttgtcttctcacaagagatggtgtac ttctcagacctcaaatatgaatgcagagatgtgtaa

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