Pimephales promelas (fathead minnow): 120494578
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Entry
120494578 CDS
T08155
Symbol
trpc6a
Name
(RefSeq) short transient receptor potential channel 6a
KO
K04969
transient receptor potential cation channel subfamily C member 6
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pprm04040
]
120494578 (trpc6a)
Ion channels [BR:
pprm04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
120494578 (trpc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
DUF3150
RIN1
Motif
Other DBs
NCBI-GeneID:
120494578
NCBI-ProteinID:
XP_039549749
LinkDB
All DBs
Position
Unknown
AA seq
874 aa
AA seq
DB search
MNQRRPVLEDKNQSKYHTIQKRNKSKDNLLMNEDFGEDSYGSYGHYHGENLARQALPKSR
RQAVRGAAYMFNAHPNSLTPVEERFLDAAEYGNIPVVRRMLEEIPELDVNCVDYMGQNAL
QLAVANEHLEVTELLLNKDNLSRIGDALLLAISKGYTRIVEAILSHKAFADYKRLTASPS
QAPMHDDFFAYDEDGTRFSHDVTPIILASHCHEYEVVHILLGKGARIEQPHDYFCACDTC
NYHQKYDSFCHSRSRINAYRGLASPAYLSLSNEDPVLAALELSNELASLANIEKEFKNEY
RKLSMQCKDFVVGLLDLCRSTEEVEAILNGEEDETLELPNRPSLIRLKLAIKYELKKFVA
HPNCQQQLLSIWYENLPGLRQQTTAIKFLVVLGVAIGLPFLAMTYWVAPCSKMGKIMRGP
FLKFVAHAASFTIFLGLLVMNAADRFDGTKLLPNMTIHDYPTQLFRMKTTPFTWMEMLII
SWVIGMIWAECKEIWSQGPREYLLEPWNMLDFGMLAIFVASFISRIMAFWHACEAQRYVD
EHYTDLTNVTLPLEVGYYQLARIDWLPSDPQLVSEGLYAIAVVLSFSRIAYILPANESFG
PLQISLGRTVKDIFKFMVIFILVFLAFMIGMFNLYSYYRGAKQNEAFTTVEESFKTLFWA
IFGLSEVRSVIVNNGHKFIENIGYVLYGVYNVTVVIVLLNMLIAMINSSFQEIEDDADVE
WKFARAKLWFTYFEEGRTLPVPFNLVPSPKSVLGLVMGSKSLLKEIFDRHKAIMKGSELS
ELGESKACREKNLTGSSRYQKIMKRLVKRYIIKAQNDKECDEVNEGELKEIKQDISSLRY
ELLEEKSNNMEELAKLVRTIETNLSQDCLILKSN
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaaaggagacctgttctggaagataaaaatcaatcaaagtatcacacaattcaa
aagaggaacaaaagtaaagacaatctactgatgaacgaagattttggcgaggactcttac
ggcagttacggacactaccatggagagaacctggcccgacaggcgctgcccaagagccga
aggcaggcggtgcgaggggcagcttacatgttcaatgcccatcctaacagtctaacgcct
gtggaggaacgtttccttgatgccgccgagtatggaaacatacctgtcgtccgcaggatg
cttgaggagatccctgagctggatgttaactgcgtggactacatgggccagaatgcattg
cagttggcagtggcaaacgaacacttggaagtaacagagctcctgttaaataaagacaac
ctgtcgcgtattggggacgcactattgttggccatcagcaaaggttacaccaggatagtc
gaggccattttgagccacaaggctttcgccgactacaagagacttacagcgagccccagt
caggctccgatgcacgatgacttttttgcgtatgacgaagatggaacgcgcttttctcat
gacgtcactccgatcattctagcttctcactgtcacgaatatgaggtcgtacacattctt
ctgggaaagggtgctcgcattgagcagccacatgattacttttgtgcctgcgacacctgc
aattaccatcaaaagtacgattctttttgccactcccgctcgcgtatcaatgcctacagg
ggattggccagtcctgcgtacctctctctgtccaatgaggatcctgtgctggcggctctg
gagctcagcaatgagctcgcctccttggccaatattgaaaaggaatttaagaatgaatat
aggaaactgtctatgcaatgcaaagactttgttgtggggcttctggacctgtgccggagc
acagaggaagtggaggccattctgaacggcgaagaggacgagactttagaactgcccaac
cgaccaagtctcattcgcttaaaactcgcaataaagtacgaactgaaaaagtttgtggcc
catcctaactgtcaacaacagctcttatcaatatggtacgaaaacctgcctggactcagg
cagcagaccacagccattaagtttctagtggttttaggtgttgcaattggactccccttt
ctagctatgacgtattgggtggcaccatgcagcaagatgggaaagatcatgcgtgggcct
ttccttaagtttgtggcacacgcggcctccttcactattttccttggccttttggtcatg
aacgctgcagaccgctttgatgggaccaagctgcttccaaatatgaccattcatgactat
ccaacgcagctgtttcgtatgaaaacaactccgtttacgtggatggaaatgctcatcatt
tcctgggtcatagggatgatttgggctgagtgtaaggagatctggtctcaaggtccgaga
gaatatttgcttgagccttggaatatgcttgatttcggaatgttggccatttttgtggca
tccttcatctcaaggataatggctttctggcatgcatgcgaagcacaacgctatgttgat
gagcactacaccgatttaaccaatgtaactttgccccttgaggtgggatactaccagttg
gctcggatcgactggctcccgtctgatcctcagttagtttcagagggcttgtacgccatc
gcagtggtcctgagcttttctcgaattgcgtacatcctgccagcgaatgagagcttcgga
ccactgcagatatctttgggacgaactgtgaaggacatcttcaagttcatggttatcttc
atcctagtctttctggctttcatgattggaatgttcaacctctactcatattatcggggt
gctaaacagaatgaagctttcacaactgtagaagaaagcttcaaaacactgttttgggca
atctttggcctttctgaggtcagatctgtaatcgtgaacaatggacacaagttcatcgag
aacattggctatgttctctatggagtttacaatgtcacagtggtcatcgtcctactcaac
atgctcattgccatgatcaacagttcctttcaggagattgaggatgatgcagatgtggag
tggaagtttgcccgggccaagctctggttcacttactttgaggagggcaggactctccct
gtaccttttaacttggttcccagtcctaagtctgttctgggtctggtgatggggtctaag
agtctcttgaaggagatttttgacagacacaaagccattatgaaggggtctgagctcagt
gagttgggagagagcaaagcttgcagggagaagaatcttacaggctccagtcgatatcag
aaaattatgaagcgtctcgttaagcgatacatcatcaaagctcaaaatgacaaggaatgt
gatgaagtcaatgagggtgaactgaaggagattaagcaggacatttcaagccttcgctat
gagctgctggaggaaaagtcgaacaacatggaggagctagcgaagctagtgaggacaatt
gaaacaaatctctctcaggactgcttgatactaaagtctaactaa
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