Paenibacillus protaetiae: ET464_16925
Help
Entry
ET464_16925 CDS
T06829
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pprt
Paenibacillus protaetiae
Pathway
pprt03030
DNA replication
pprt03410
Base excision repair
pprt03420
Nucleotide excision repair
pprt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ET464_16925 (ligA)
03410 Base excision repair
ET464_16925 (ligA)
03420 Nucleotide excision repair
ET464_16925 (ligA)
03430 Mismatch repair
ET464_16925 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprt03032
]
ET464_16925 (ligA)
03400 DNA repair and recombination proteins [BR:
pprt03400
]
ET464_16925 (ligA)
Enzymes [BR:
pprt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ET464_16925 (ligA)
DNA replication proteins [BR:
pprt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ET464_16925 (ligA)
DNA repair and recombination proteins [BR:
pprt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ET464_16925 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ET464_16925 (ligA)
MMR (mismatch excision repair)
DNA ligase
ET464_16925 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ET464_16925 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
HHH_2
OB_DNA_ligase
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
RNA_lig_T4_1
BRCT_2
DUF669
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QAY68582
UniProt:
A0A4P6EZJ8
LinkDB
All DBs
Position
3676445..3678439
Genome browser
AA seq
664 aa
AA seq
DB search
MQELADELAAHNYQYYTLDQPTISDADYDKLYDELVSLEAQSGITLPDSPTQRVGGDLLK
GFEPHRHRAKLWSLDKAQDAEDLLAWNQRVLKAVADYNAKHPEEEPLPQPAYAIELKFDG
LTLNLTYENGRLVQAATRGNGTVGEGILPQVKTIKSVPLTIPFQEGTIEVQGEGLMNLSV
LERYNATAAEQLKNARNAAAGALRNLNPKVTAERKLSAFFYNVGYAEGVSFQDHKQMQQF
LRDNKFKVNPYIVYCDTIEEVQKELKAIEERRHTLDYLIDGAVVKLTDMRTREALGYTDK
FPRWAVAYKFEAEETTTVLESVSWEVGRTGKITPVARVEAVELAGVTVQNCTLNNIGDIE
RKNLKFALGTLVSIRRSNDVIPEILGKADDEPGQEIEFPTVCPSCGTELELRGAHLFCNN
KLGCRPQLIGRITHFASRDAMDIETFSIMTAEQLYEECGVRDPADLYELTYEDLIKLDRF
GDKKARKLIDAFEASKTRDLAAFLFALGIPNTGKATTKTLADHFGSLEAIMNAQPDELTA
LQDIGGIVADSIVNFFNDPNMKESIRRMLASGVKAEADRETEIRTDSVFTGKTVVLTGTL
SLMTRDEAAKKLEACGAKVTGSVSKKTDYVIAGDNAGSKLAKAKELGIAVIEDENELLRL
LGEA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagctggcagatgagcttgccgctcacaattatcaatattatacgctggatcag
ccgacgatcagcgatgcggattacgacaagctgtatgacgagcttgtctcgctggaggcg
cagtccggcattacgctgccggactccccgacgcagcgggtaggcggcgatttgctcaaa
ggctttgagcctcaccgtcaccgggcgaagctttggagcctggacaaagcgcaggacgcg
gaggatttgctggcctggaaccagcgtgtgctgaaagcggtagccgactataacgccaag
catccggaggaagagccgctcccgcagccggcgtatgctatcgagcttaagttcgacggg
cttaccttgaacctgacgtatgagaacggcaggcttgtgcaagcggcaacgcgcggcaac
ggaacggtaggcgaaggcatcctgccgcaggtgaagacgattaagtcggttccgctgacg
atcccttttcaagaaggaacgatcgaagtgcagggagaagggttaatgaacttgtccgtg
ctggagcgctataacgcaacggccgccgaacagctcaaaaacgcccggaacgccgccgcc
ggcgctttgcgcaacctgaacccgaaagtaacggccgaacgcaagctgagcgcttttttc
tataatgtaggatatgccgaaggcgtttcttttcaggaccataaacaaatgcagcagttt
ttgcgcgataacaagtttaaggtcaatccctacatcgtatattgcgatacgattgaagag
gtgcagaaggagcttaaggccattgaagaacggcgccatacgctggattatttgatcgac
ggagcggttgtgaagctgacggacatgcgtacgcgcgaagcgcttggttataccgacaag
ttcccgcgttgggcggttgcctataaattcgaagcggaagaaacaacaaccgtgctggag
tctgtttcctgggaagtggggcgtaccggcaaaataacgccggtagcgcgcgtagaagcg
gttgaacttgccggcgttacggtacagaactgcacactgaacaatatcggcgacattgag
cggaaaaacttgaagtttgccctcggcacactggtttcgattcgccgctccaacgatgtc
attccggaaatattgggcaaagcggacgacgagccgggtcaggagatcgaattcccgacg
gtttgtccgtcctgcggcaccgagctcgagcttcgcggcgcgcatttgttctgcaacaat
aaactgggctgccggcctcagctcattggccgtattacccattttgcttcgcgtgacgcg
atggatatcgagaccttcagcattatgacggcggaacagctgtatgaagaatgcggcgtc
cgcgatccggcggatctctatgaacttacctatgaagatttgatcaagctggaccgtttc
ggcgacaaaaaagcacgcaagctgatagacgctttcgaagcttccaagactcgcgatctg
gctgcctttttatttgcgctgggcataccgaacactggcaaagcgacaaccaaaacgctg
gccgaccatttcggcagccttgaagcgatcatgaacgcccagcctgatgagctgactgcg
ctgcaggatatcggcggcatcgtagcggacagcatcgtgaacttctttaacgaccctaat
atgaaggaaagcatccgccgcatgcttgcgagcggggtgaaagccgaagcggatcgagag
acggaaattcgcacagacagtgtatttaccggcaagacggttgtgctgaccggcacgctt
tcgctgatgacaagggacgaagccgcgaagaagctggaggcttgcggagctaaagttaca
ggcagcgtctcgaaaaagacagactacgtgattgccggggacaacgctggcagcaagctg
gcgaaagccaaggagcttggcatcgccgttattgaagatgagaatgagctgcttcgcctg
ctgggggaagcttaa
DBGET
integrated database retrieval system
