Paroceanicella profunda: FDP22_00180
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Entry
FDP22_00180 CDS
T06319
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ppru
Paroceanicella profunda
Pathway
ppru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDP22_00180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppru03019
]
FDP22_00180
Enzymes [BR:
ppru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FDP22_00180
Messenger RNA biogenesis [BR:
ppru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FDP22_00180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QDL90353
UniProt:
A0A5B8FWH1
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All DBs
Position
39947..41299
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AA seq
450 aa
AA seq
DB search
MATAIPDKGPALTNDTFRAFGLAPSILSALDRAGMTTPTPIQAQAIAPQLEGRDILGIAQ
TGTGKTAAFALPILHQILDMPGRPSPKTTRALVLAPTRELAVQIEEAFRKFADGARLSTA
LVLGGVSRNSQIRRMARGVDVLVATPGRLTDLVGEGHIRLDETRFAVLDEADRMLDMGFV
REVKKIHAALHPRRQSALFSATMPTDVAGLAEGFLRDPVRIAVAPQGETAGTITQSVEVM
QHAEKRFRLAELVGSTDVSRVIVFARTKRGADRVAENLGKDGVPAEAIHGNKAQNARQRA
LDAFRSGRVKVLVATDIAARGIDVPGISHVVNYELPDEAESYVHRIGRTGRNGLDGIAIT
LCAPDEGDKLRAIEKLTRQQLAPEGFKSTPSTTARKGRGGGNPAKPHSARRAQQEGALTA
KGPRAPSGKPAGVAAARRRPRRTGRSGAAA
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccacagccattccggacaaaggacctgctttgaccaacgataccttccgggccttc
ggcctggctccgtccatcctgtccgctctcgaccgggccggcatgaccacccccaccccc
atccaggcgcaggcgatcgcgccgcagctcgagggccgcgacatcctgggcatcgcccag
accggcaccggcaagactgcggccttcgcgctgcccatcctgcaccagatcctcgacatg
ccgggccggccttcgccgaagaccacccgcgccctcgtgctcgccccgacccgcgagctc
gccgtgcagatcgaggaagccttccgcaagttcgcggacggcgcccgcctctccaccgcc
ctcgtgctcggcggcgtctcgcgcaattcgcagatccggcgcatggcgcgcggtgtcgac
gtgctcgtcgccacgccgggccgcctcaccgacctggtcggcgaaggccatatccggctc
gacgagacccgcttcgcggtgctcgacgaggcggaccgcatgctcgacatgggcttcgtg
cgcgaagtgaagaagatccacgccgccctgcatccgcgccgccagtcggcgctgttctcg
gccaccatgccgaccgatgtcgccgggctggccgaagggttcctgcgtgatcctgtccgc
atcgccgtcgccccgcagggggagaccgccggcaccatcacccagagcgtggaagtgatg
cagcacgccgagaagcgcttccggctggccgagctggtgggcagcaccgatgtctcccgc
gtcatcgtcttcgcccgcaccaagcgcggcgcggaccgggtggccgagaacctgggcaag
gacggcgttccggccgaggccatccacggcaacaaggcccagaacgcccgccagcgcgcg
ctcgacgccttccgctccggccgggtcaaagtgctcgtggccaccgacatcgcggcccgc
ggcatcgatgtgccgggcatcagccatgtggtgaactacgagctgcccgacgaggcggag
agctacgtgcaccgcatcggccgcaccgggcgcaacgggctcgatggcatcgccatcacg
ctctgcgctccggatgagggcgacaagctgcgcgcgatcgagaagctgacccgtcagcag
ctcgcgcccgagggcttcaagtccacgccttcgacgacggcccgcaagggtcgcggcggc
gggaacccggccaagccgcactccgcccgccgcgcccagcaggagggtgcgctcaccgcg
aagggcccgcgcgccccgtccggcaagcccgccggcgttgcagcggcccgccgccgcccg
cgccgcaccggccgctccggcgccgccgcctga
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