Paroceanicella profunda: FDP22_01740
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Entry
FDP22_01740 CDS
T06319
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppru
Paroceanicella profunda
Pathway
ppru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FDP22_01740 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppru03021
]
FDP22_01740 (rpoC)
03400 DNA repair and recombination proteins [BR:
ppru03400
]
FDP22_01740 (rpoC)
Enzymes [BR:
ppru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FDP22_01740 (rpoC)
Transcription machinery [BR:
ppru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FDP22_01740 (rpoC)
DNA repair and recombination proteins [BR:
ppru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FDP22_01740 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QDL90619
UniProt:
A0A5B8FVU7
LinkDB
All DBs
Position
complement(391267..395493)
Genome browser
AA seq
1408 aa
AA seq
DB search
MNQEVMNPFNPSAPPRTFDEIKISLASPERILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYRGVTCEKCGVEVTLQKVRRERMGHIDLAAPVAHIWFLKS
LPSRIGLMLDMTLRDLERILYFEQYVVIEPGLTDLKHRQMLTEEEYLDAQDQYGEDAFTA
GIGAEAIREMLAAIDLQQEADQLREDLSVATGELKPKKIIKRLKLVENFLESGNRPEWMV
LTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSMEAQL
EARVLMMSTNNVLSPANGKPIIVPSQDMILGLYYITLEKEGMAGQGMVFRDIEEVDHALE
SGAVTLHSKITARLEQVDENGELVMQRFETTPGRLRLGALLPKNAKAPFEIVNRLLRKKE
VGEIIDTVYRYCGQKESVIFCDQIMTLGFREAFKAGISFGKDDMVIPDTKWTIVNETRDA
AKEFEQQYLDGLITQGEKYNKVVDAWSKCSDKVADAMMAEISSVKFDAEGRQMEPNSVYM
MAHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIIKIDDCGTDAGITAATVVEGGEVVASLSDRILGRVL
AEDVIDPISRELLFSRGHLLDERDSEIIETAQVQTVKIRSPLTCEADDGICAQCYGRDLA
RGTKVNPGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGSQSFVEASVEGKVAIRNRNL
IETADGDILVMGRNVVIVITDDQGVERATHKAAYGAKLLTKEGDIVSRGTKLMEWDPFTL
PIISEKAGRVKFVDLIPGISVREDTDEATGISQRIVSDWRSAPKGNELKPEVIVMDAETG
EPMRLDNGNPAHYGMSVDAILSVEDGQDVPAGGILARIPREGARTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTVRFGRDFKNKRRITIEPAEEGADPVEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILAIMGIEALADYLINEVQDVYRLQGVKINDKHIEVIVRQMLQKIE
ITKSGGTTLLPGEQVDRVEFDEENAKSIREGREPAEGGPVLLGITKASLQTRSFISAASF
QETTRVLTEASTQGKRDKLVGLKENVIVGRLIPAGTGGAIQKIRQVAADRDARVISERQA
EAAAAAEAAIAAAPPEEETAPTGDPFFD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcatgaacccgttcaatccgagtgcccctccgcggacgttcgacgag
atcaagatctcgctcgcgagcccggagcgcattctttcctggtcgtacggtgagatcaag
aagccggaaacgatcaactaccgcacgttcaagccggagcgggacgggctgttctgcgcc
cgtatcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tatcgcggggtgacctgcgagaaatgcggcgtcgaagtcacgctccagaaggtgcgtcgc
gagcggatgggtcacatcgacctggccgctccggtggcgcatatctggttcctgaagtcg
ctgccctcgcgcatcggcctgatgctggacatgacgctgcgcgacctcgagcgcatcctc
tacttcgagcagtatgtcgtcatcgagccgggcctcaccgacctgaagcatcgccagatg
ctgacggaggaggagtacctcgacgcgcaggaccagtacggcgaggacgccttcaccgcc
ggcatcggcgccgaggcgatccgcgagatgctggccgccatcgacctccagcaggaggcc
gaccagctgcgcgaggatctctcggtcgcgaccggtgagctgaagcccaagaagatcatc
aagcgcctgaagctggtggagaacttcctcgaatccggcaaccggccggagtggatggtc
ctgaccgtggtgccggtgatcccgcccgagctgcgcccgctggtgccgctggacgggggc
cgtttcgccacctcggacctgaacgacctctaccgccgcgtgatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcgcccgacatcatcgtgcgcaacgagaagcgcatg
ctgcaggaagccgtggacgcgctgttcgacaacggccgccgcggccgcgtcatcacgggg
gccaacaagcgcccgctgaagtcgctctccgacatgctcaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtggacttctcgggccgctccgtcatcgtgacgggg
ccggagctgaagctgcaccagtgcgggttgccgaagaagatggcgcttgagctgttcaag
cccttcatctactcgcggcttgacgcgaaggggctttcgagcaccgtgaagcaggccaag
aagctggtggagaaggagcgtccggaagtctgggatatcctggacgaggtcatccgcgag
cacccggttctgctgaaccgtgcgcccacgctgcaccgtctgggcatccaggccttcgag
ccgatcctgatcgagggcaaggccatccagcttcacccgctggtgtgctcggccttcaac
gccgacttcgacggcgaccagatggccgtgcacgtgccgctttcgatggaggcgcagctc
gaggcgcgcgtcctgatgatgtccacgaacaacgtgctgtcgcccgccaacggcaagccg
atcatcgtgccgtcgcaggacatgatcctcggcctctactacatcaccctcgagaaggag
gggatggccggccagggcatggtgttccgcgatatcgaggaagtggaccacgcgctggaa
tccggtgccgtcacgctgcactccaagatcacggcccgccttgagcaggtcgacgagaat
ggcgagttggtgatgcagcggttcgagaccacgccgggccgcctgcggctgggcgcgctg
ctgcccaagaatgccaaggcgccgttcgagatcgtcaaccgcctcctgcgcaagaaggaa
gtcggcgagatcatcgacaccgtctaccgctattgcggccagaaggagtcggtcatcttc
tgcgaccagatcatgacgctgggcttccgcgaggcgttcaaggccggcatttcgttcggc
aaggacgatatggtgatcccggacaccaagtggaccatcgtgaacgagacccgcgatgcc
gcgaaggagttcgagcagcagtaccttgacggtctgatcacccagggtgagaagtacaac
aaggtggtcgacgcctggtccaagtgctcggacaaggtggcggacgcgatgatggccgag
atttcctcggtgaagttcgacgccgaagggcgccagatggagccgaactcggtctacatg
atggcgcattccggcgcgcgtggctctccggcgcagatgaagcagctgggcggcatgcgc
ggcctgatggccaagccctcgggcgagatcatcgagacgccgatcgtgtcgaacttcaag
gaaggcctcaccgtgctcgagtacttcaactcgacccacggcgcgcgcaagggcctggcc
gacaccgcgctcaagaccgcgaactccggctacctcacccgccgcctggtggatgtggcg
caggactgcatcatcaagatcgatgattgcggcaccgacgccggcatcaccgccgcgact
gtggtcgagggtggtgaggtcgtcgcctcgctctccgaccgcatcctgggccgcgtgctg
gccgaggacgtgatcgacccgatcagccgcgagctgctgttcagccgcggtcacctgctc
gacgagcgcgattccgagatcatcgagaccgcacaggtccagactgtcaagatccgctcg
ccgctgacctgcgaggccgatgacggcatctgcgcccagtgctacgggcgtgacctggcg
cgcggcaccaaagtgaacccgggcgaggctgtcggcatcattgccgcgcagtcgatcggt
gagccgggcacgcagctgaccatgcgcaccttccacatcgggggtatcgcgcagggcggc
agccagtccttcgtcgaagcgtcggtggagggcaaggtcgccatccgcaaccgcaacctg
atcgagaccgccgatggcgacatcctcgtgatgggccgcaacgtggtcatcgtcatcacc
gacgaccagggcgtggagcgcgcgacccacaaggccgcgtatggtgcgaagctgctgacc
aaggaaggcgacatcgtctcccgcgggaccaagctgatggagtgggatccgttcaccctg
cccatcatctcggagaaggcgggccgcgtgaagttcgtcgacctgatccccggcatctcg
gtgcgcgaggatacggatgaggcgaccggcatcagccagcgcatcgtgtcggactggcgt
tcggcgcccaagggcaacgagctgaagcccgaggtgatcgtgatggatgcggagaccggc
gagccgatgcggctcgataacggcaaccccgcccattacggcatgtcggtggacgccatt
ctgtcggtcgaggacggtcaggacgttcccgccggcggcatcctggcgcgtatcccgcgc
gagggggcccggacgaaggacatcaccggcggtctgccgcgtgtggccgagctgttcgag
gcccgtcgtccgaaggaccacgccatcatcgccgagatcgacggtacggtgcggttcggg
cgcgacttcaagaacaagcgccggatcacgatcgaaccggcggaagaaggtgcggatccg
gtcgagtacatggtgcccaagggcaagcacatcccggtggccgaaggcgacttcgtccag
aagggtgactacatcatggacggcaacccggcgccgcatgacatcctggcgatcatgggc
atcgaggccctggccgattacctcatcaacgaggtgcaggacgtctaccggctgcagggc
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgag
atcaccaagtcgggcggcaccacgctgctgccgggcgagcaggtcgaccgcgtcgagttc
gacgaggagaacgccaagtcgatccgcgaggggcgtgagcccgccgagggtgggccggtg
ctgcttggtatcaccaaggccagcctgcagacccgctcgttcatctccgccgcctccttc
caggagacgacgcgggtgctgaccgaggcctcgacccagggcaagcgcgacaagctcgtg
ggcctgaaggagaacgtcatcgtcggccggctgatcccggccggcaccggtggcgcgatc
cagaagatccgccaggttgccgcggaccgcgacgcccgggtgatctccgagcgccaggcc
gaggcggcggccgccgccgaagccgccatcgccgcggcaccgcccgaggaagagacggcg
ccgaccggggatccgttcttcgattga
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integrated database retrieval system
