Paroceanicella profunda: FDP22_08280
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Entry
FDP22_08280 CDS
T06319
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ppru
Paroceanicella profunda
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppru03400
]
FDP22_08280 (addB)
Enzymes [BR:
ppru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FDP22_08280 (addB)
DNA repair and recombination proteins [BR:
ppru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FDP22_08280 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
RBM39linker
Motif
Other DBs
NCBI-ProteinID:
QDL91774
UniProt:
A0A5B8FWB2
LinkDB
All DBs
Position
complement(1850730..1853729)
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AA seq
999 aa
AA seq
DB search
MLFHSPAPRVFTLAPGVNFPAAFAAGLKARARGLPPEALGRVEVIVNASRAAQSLTAALA
DALAPGLLPRVMLLSDLAARPDAPELPPAVDRLRRMLRLSELVRAFLESTGSFAPVSARF
DLAASLAELLDEMQGWAVPAERLERLDVEDHSLHWQTTLAFLRIVARAWPEMLTESEDGA
LDPEARQRVTVEALAARWAEAPPQHPVIVAGSTGSRAATAELMQAVARLPQGALVLPGFD
GHLPGPVWPDLPADHPQASLGRLVTALGLDPERLESWHGTPPEPERSALVSLALRPAPVT
DAWRDAVPLVRAQAAAATAGLSLIEADSAREEALAIALAMRETLERPGARVALVTPDRSL
ARQVTAALARWDIRPDDTAGRPLSLTAPGIFLRLVARTAGRPAAPDTLIALLKHPLAGGA
GSIRRDHMLTVATLERDLRAEAAPEVTPEWITAWAARRLGRAERTGRPVTGGPEGLLAWA
GWLAGLLGPLCAPGPAELTRRAATLRAAAEALCAGVGGGPAEAARLWALSDGEAAERLFA
RLEEQDRVGASLGATDLARLMDELMQAENVPPSDPGTAPDRRVMILGALEARMQSADRLI
LAGLNDGTWPKLPGADPWLSRPMRATLGLPLPERQVGLSAHDFQTGASAGEVILSRAKRA
EGTPTIASRWLIRLTNLLEGSGAEGVAALEAMAARGDRWRALARRLDRPAAAVPPEPRPA
PRPPVEARPRALSVTQIETLIRDPYAIYARHVLGLRALDPLGRPPDARDRGQVLHAVMER
FVAETEAGLPEEPRPLFERIVAEEIDAETPWPAQRRLWRGRMGRGAAWFLEQEAARREVG
HPLRQEGRGVLTFALPAGPFTLKAKADRLDRLTDGTLAILDYKTGSPPSRAQMRGYARQL
WLEAAIAEAGGFSGIPRAAVSELVYIGLPASGTEGKIERVEVGPGALAEDWQRFVEMMAR
FDAPDTPYTARLRPDFLTYGSDYDHLSRKGEWDDGEDAE
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgctgttccacagccccgccccacgggtgttcaccctggcgccgggggtgaacttcccc
gccgccttcgccgccgggctgaaggcgcgcgccaggggcctgccgccggaggcgctgggg
cgggtggaggtcatcgtgaacgccagccgcgcggcgcagagcctcacggccgcgctggcc
gatgccctggcgcccgggctgctgccgcgcgtgatgctgctctccgacctcgccgcccgg
ccggacgcgccggagctgccgcccgcggtggaccggctgcgccgcatgctgcgcctgtcg
gagctggtgcgcgccttcctggagagcaccggcagcttcgccccggtctccgcgcgcttc
gaccttgccgccagcctcgccgagctgctggacgagatgcagggctgggcggtgccggcg
gagcggctggagcggctcgatgtcgaggaccactcgctgcactggcagaccacgctcgcc
ttcctgcgcatcgtcgcgcgggcctggccggagatgctcaccgagagcgaggacggcgcg
ctggaccccgaggcgcggcagcgcgtcacggtggaggcgctggccgcccgctgggcggag
gcgccgccgcaacaccccgtgatcgtggccggttccaccggcagccgggccgcaacggcc
gagctgatgcaggccgtggcccgtctgccgcaaggcgcgctggtgctgccgggcttcgac
ggccacctgcccggcccggtctggcccgacctgccggcggaccacccgcaggccagcctg
ggccgcctcgtcaccgcgctggggctggacccggagcggctggagagctggcacggcacg
ccgccggagccggaacgctccgccctcgtcagcctcgccctgcgccccgccccggtgacc
gacgcctggcgcgacgcggtgccgctggtgcgcgcccaggccgccgcggccaccgccggg
ctgagcctgatcgaggccgacagcgcgcgggaggaagccctcgccatcgccctggccatg
cgcgagacgctggagcggcccggcgcccgcgtggcgctggtcacgccggaccggagcctc
gcccggcaggtgacggcggcgctggcgcgctgggacatccgccccgatgacaccgccggc
cgtccgctctcgctcaccgcgccggggatcttcctgcgcctcgtcgcgcgcaccgccggg
cggccggcggcgccggacacgctgatcgccctgctgaagcacccgctcgccggcggggcc
ggcagcatccggcgcgaccacatgctgaccgttgccacgctggagcgcgacctgcgcgcg
gaggccgccccggaggtgacgccggagtggatcaccgcctgggccgcgcgccggctgggc
cgggcggagcgcacgggccgcccggtcaccggcgggccggaggggctgctggcctgggcg
ggctggctggccgggctgctgggcccgctctgcgcgccgggcccggccgagctcacccgc
cgcgccgccaccctgcgcgcggccgccgaggcgttgtgtgccggggttggcggcgggccg
gcggaggccgcccggctctgggcgctttccgacggcgaggcggcggagcggctcttcgcc
cggctggaggagcaggaccgggtgggcgccagcctcggcgccaccgatctcgcccggctg
atggacgagctgatgcaggccgagaacgtgcctccctcggaccccggcaccgcgccggac
cggcgggtgatgatcctcggcgcgctggaggcgcggatgcagagcgcggaccggctcatc
ctcgccgggctgaacgacggcacctggcccaagctgccgggcgccgacccctggctgtcg
cgccccatgcgcgccaccctgggcctgccgctgcccgagcgccaggtgggcctctccgcc
catgatttccagaccggggccagcgccggagaggtgatcctttcgcgcgcgaaacgggcg
gagggcacgcccaccatcgcctcgcgctggctcatccgcctcaccaacctgctggagggc
agtggcgcggagggggtggcggcgctggaggccatggccgcgcgcggcgaccgctggcgc
gcccttgcccggcggctggaccggccggccgccgccgtcccgcccgagccgcgccccgct
ccgcgcccgccggtggaggcgcggccgcgcgcgctctccgtcacccagatcgagacgctg
atccgcgacccctatgccatctatgcccgccacgtgctgggcctgcgcgcgctggacccg
ctgggccgcccgcccgacgcacgcgaccgcggccaggtgctgcacgcggtgatggagcgc
ttcgtggccgagaccgaggccggcctgccggaggagccccgccccctgttcgagcgcatc
gtggcggaggagatcgacgccgaaaccccctggcccgcccagcgccggctctggcgcggc
cgcatgggccgcggcgcggcctggttcctggagcaggaggcggcgcgccgcgaggtcggc
cacccgctccggcaggaggggcgcggcgtgctcaccttcgcgctgcccgccggccccttc
accctgaaggccaaggcggaccggctggaccggctcaccgacggcaccctcgccattctg
gactacaagaccggcagccccccttccagggcgcagatgcgcggctatgcccggcagctc
tggctggaggcggccatcgccgaggcgggcggcttctccggcattccgcgcgccgcggtg
agcgagctggtctacatcggcctgccggccagcggcacggagggcaagatcgagcgggtg
gaggtgggccccggcgcgctggccgaggactggcagcgcttcgtggagatgatggcccgg
ttcgacgccccggacaccccctacaccgcccggctgcgcccggatttcctgacctatggc
agcgattacgaccacctctcgcgcaagggcgagtgggatgacggggaggacgccgaatga
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