Paroceanicella profunda: FDP22_12905
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Entry
FDP22_12905 CDS
T06319
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
ppru
Paroceanicella profunda
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppru03016
]
FDP22_12905 (rnd)
Enzymes [BR:
ppru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FDP22_12905 (rnd)
Transfer RNA biogenesis [BR:
ppru03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FDP22_12905 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QDL92606
UniProt:
A0A5B8FV00
LinkDB
All DBs
Position
2882880..2884052
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AA seq
390 aa
AA seq
DB search
MQIITTTEDLARFCSDCATAPYVTVDTEFLRERTYYAQLCLVQLARPAAEGEDDEASAAI
VDPLAKGLSLEPLFELMRNTGVMKVFHAARQDLEIFYTLMGSVPEPIFDSQVAAMVCGLG
DQASYESLVRRVARQGMDKSARFTDWSRRPLSEKQLSYAIADVTHLRVIYEALSAQLAES
GRTAWVDEEMAILTSPATYDMDPEEAWRRVKTRTTAPKFLAVVRELAAWRERQARERDVP
RNRLLKDDALLEIASNKPTTLEELGRSRLLQREGRRNDMSDGILRAVAAGIACPPDKRPV
VPEPFVPKPGGQALGDLLRVLLKAKAEASGVAPRLIASSADLDRIASGEDADVPAMSGWR
HEVFGGDAERLREGRIALSADQGGVKLIEI
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcatcacgacgaccgaggatctcgcccgattctgctccgactgcgccacggct
ccctacgtcacggtcgatacggaattcctgcgcgagaggacctactacgcccagctctgc
ctcgtgcagctcgccaggccggccgcggagggcgaggatgacgaagcatccgccgccatc
gtcgacccgctggcgaagggcctttcgctcgagccgctgttcgagctgatgcgcaatacc
ggcgtgatgaaggtgtttcacgccgcacggcaggacctcgagatcttctacacgctgatg
ggctcggtgccggagccgatcttcgacagccaggtggccgcgatggtctgcgggctgggg
gatcaggcgagctacgagtcgctcgtgcgccgggtggcacggcaggggatggacaagtcc
gcccgcttcaccgactggtcgcgccggccgctgagcgagaagcagctctcctacgccatt
gccgatgtcacccacctgagggtgatctacgaggcgctctccgcgcagctggccgagagc
ggccgcaccgcctgggtggacgaggaaatggccatcctcacctcgcccgccacctacgac
atggaccccgaggaggcctggcgccgggtgaagacccgcaccaccgcgccgaagttcctt
gccgtggtacgcgagctggcggcctggcgcgagcggcaggcgcgagagcgcgacgtgccg
cgcaaccggctgctgaaggatgacgcgctgctggagatcgcctccaacaagcccaccacg
ctggaggagctcggccgctcacggctgctgcagcgcgagggccggcgcaacgacatgtcc
gacgggatcctgcgcgcggtggccgcgggcatcgcctgcccgccggacaagcggcccgtg
gttccggaacccttcgtgccgaagcccggcggccaggcgctcggcgacctgctgcgcgtg
ctgctgaaggcgaaggccgaggccagcggcgtggccccgcggctcatcgcctccagcgcc
gatctcgaccggatcgccagtggcgaggacgcggacgtgccggcgatgagcggctggcgc
cacgaggtgttcggcggcgatgcagagcgcctgcgcgaagggcgcatcgcgctttcggcc
gaccagggcggcgtgaagctcatcgagatctga
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