Paroceanicella profunda: FDP22_15500
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Entry
FDP22_15500 CDS
T06319
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ppru
Paroceanicella profunda
Pathway
ppru02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FDP22_15500 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppru03021
]
FDP22_15500 (rpoD)
Transcription machinery [BR:
ppru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FDP22_15500 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QDL93065
UniProt:
A0A5B8FWZ8
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All DBs
Position
3490554..3492575
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AA seq
673 aa
AA seq
DB search
MAAKDLEQDKEQDQQDGNASMLDMSQANVKKMISQAKARGYITYEELNQALPSDQFSSEQ
IEDVMSLLSEMGINVIENEESDAEGEGDQKESESREVATTSSNSEGLDRTDDPVRMYLRE
MGSVELLSREGEIAIAKRIEAGRNTMISGLCESPLTFQAITIWRDELLEEKIMLRDVIDL
ETTFGASVEGDVEEELAVDGEGAVEGETPAAAEKVAPAPVGPKAEGEADAEPDADVDGDG
DGGDEEDEQSNLSLSAMEAALKPQVLETLERIAENYSRLSDMQDSRINAALNQAQTFSAF
QERDYQRLRSEIVELVNSLHLHNNRIEALVDQLYGINRRIMTLDGQMVKIADLAKVNRRD
FVEEYRGSELDPGWIDRVSALKGRGWADIGGRFRDRVDGVRNEMGSIGQHVGVDIPEFRR
IVQTVQKGEKESRIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFE
YRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTP
EELAAKLQMPLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQQNL
KETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKH
PSRSRKLRSFLDS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaaggacttggagcaagacaaggaacaggaccagcaggacggcaatgcctcg
atgctcgacatgagccaggcgaacgtcaagaagatgatctcgcaggccaaggcccgtgga
tacatcacctatgaggaactgaaccaggcgctcccgtccgaccagttttcatccgagcag
atcgaagacgtgatgtccctcctctcggagatgggcatcaatgtgatcgagaacgaggag
agcgacgccgagggcgagggcgaccagaaggaatcggagagccgcgaggtcgcgacgact
tcgagcaacagcgaggggctggaccggaccgacgatccggtccgcatgtacctgcgcgag
atggggtcggtcgaactgctcagccgcgagggcgagatcgccatcgccaagcgcatcgag
gccggccgcaacacgatgatttccgggctgtgcgaaagcccgctcaccttccaggccatc
acgatctggcgcgacgagctcctggaagagaagatcatgctgcgcgacgtgatcgacctg
gagaccactttcggtgcctccgtcgaaggcgacgtggaggaagagctggcggtggacggc
gaaggcgccgtggagggtgagacccccgccgccgccgagaaggtggcccctgccccggtc
ggcccgaaggcggagggcgaggctgacgccgagccggatgcggacgtagacggcgacggt
gacggcggcgacgaggaggacgagcagtccaatctctcgctctcggcgatggaggcggcg
ctgaagccgcaggtgctcgagaccctcgagcgcatcgcggaaaactactcccgcctgtcg
gacatgcaggacagccgcatcaacgccgccctgaaccaggcccagaccttctccgccttc
caggagcgcgactaccagcgcctgcgctcggagatcgtggaactggtgaactcgctgcac
ctgcacaacaaccgcatcgaggcgctggtcgaccagctttacggcatcaaccgccgcatc
atgaccctcgacggccagatggtgaagatcgccgacctggcgaaggtgaaccgtcgcgat
ttcgtggaggaataccgcggatcggagctcgacccgggctggatcgaccgtgtctccgcc
ctcaagggccgcggctgggcggatatcggcgggcgcttccgcgaccgtgtggacggcgtg
cgcaacgagatgggctccatcggccagcacgtgggcgtggacatccccgagttccgacgc
atcgtccagaccgtgcagaagggggagaaggaaagccgcatcgccaagaaggagatggtg
gaggccaacctgcggctcgtgatctcgatcgcgaagaaatacaccaaccgcgggctgcag
ttcctcgacctcatccaggaaggcaacatcggcctgatgaaggcggtggacaagttcgag
taccgccgcggctacaagttctcgacctatgccacctggtggatccgccaggcgatcacc
cgctcgatcgccgaccaggcccgcaccatccgcatcccggtgcacatgatcgagacgatc
aacaagctggtgcgcaccgggcgccagatgctccacgagatcggccgcgagccgaccccg
gaagagctggccgccaagctgcagatgccgctggagaaggtccgcaaggtgatgaagatc
gccaaggagcccatctccctcgaaaccccgatcggtgacgaggaagacagccagctcggc
gatttcatcgaggacaagaacgccgtgctgccgctcgacagcgcgatccagcagaacctg
aaggagacgaccacccgcgtgctcgcctccctcacgccccgcgaggagcgggttctgcgc
atgcgcttcggcatcggcatgaacaccgaccacacgcttgaggaggtcggccagcagttc
tcggtgacgcgtgagcgcatccgccagatcgaggcgaaggcgctgcgcaagctcaagcat
ccgagccgctcgcgcaagctgcgcagcttcctcgacagctga
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