Paroceanicella profunda: FDP22_17260
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Entry
FDP22_17260 CDS
T06319
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ppru
Paroceanicella profunda
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppru03032
]
FDP22_17260
03036 Chromosome and associated proteins [BR:
ppru03036
]
FDP22_17260
03400 DNA repair and recombination proteins [BR:
ppru03400
]
FDP22_17260
DNA replication proteins [BR:
ppru03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
FDP22_17260
Chromosome and associated proteins [BR:
ppru03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
FDP22_17260
DNA repair and recombination proteins [BR:
ppru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
FDP22_17260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
SctB2
HU-CCDC81_bac_2
HU-CCDC81_euk_2
SasG_E
TBPIP
SSPI
Motif
Other DBs
NCBI-ProteinID:
QDL93377
UniProt:
A0A5B8FIL1
LinkDB
All DBs
Position
complement(3861606..3861896)
Genome browser
AA seq
96 aa
AA seq
DB search
MSQKPMTKTQLVASLSEAASIDKAVANRTLDALAAIVAGEVENGGAVTLPGLGKFACRER
PARTVRNPSTGEQIEKPADRAVKVVIAKALKDVVNS
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagaaaccgatgaccaaaacccagctcgtcgcttcgctttcggaagcggccagc
atcgacaaggcggtcgccaaccggacgctcgacgccctcgccgccattgtcgcgggtgag
gtcgagaacggtggcgcggtgacgcttcccggcctcggcaagttcgcatgccgcgaacgc
ccggcccgcaccgtccgcaacccgtcgacgggcgagcagatcgagaagccggcagatcgc
gccgtgaaggtcgtgatcgcgaaggctctcaaggacgtggtcaacagctga
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