Paroceanicella profunda: FDP22_19925
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Entry
FDP22_19925 CDS
T06319
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppru
Paroceanicella profunda
Pathway
ppru03030
DNA replication
ppru03430
Mismatch repair
ppru03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FDP22_19925 (dnaE)
03430 Mismatch repair
FDP22_19925 (dnaE)
03440 Homologous recombination
FDP22_19925 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppru03032
]
FDP22_19925 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppru03400
]
FDP22_19925 (dnaE)
Enzymes [BR:
ppru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FDP22_19925 (dnaE)
DNA replication proteins [BR:
ppru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FDP22_19925 (dnaE)
DNA repair and recombination proteins [BR:
ppru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FDP22_19925 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Motif
Other DBs
NCBI-ProteinID:
QDL94128
UniProt:
A0A5B8FJC3
LinkDB
All DBs
Position
pD4M1A:complement(409803..413243)
Genome browser
AA seq
1146 aa
AA seq
DB search
MSTPRFIHLRTHTAYSLLEGAIQAKALPKLAAGDDMPAVAVTDTGNLFCALEFSEYAAGA
GLQPIIGCQMRLAYAAAASPTEKAPAPRDIVLLAQDEAGYLNLMKLNSCAFLDSPDAEPH
ITLPELTRHAEGLICLTGGAAGPVGQLLQDGQGAKARALTEKLAGLFPGRLYIEVQRHGT
APERRTKAEAATEPGFVELAYALELPLVATNDVHFANREMYEAHDALLCIADGAYVDQAA
PRRRLTPEHCFKTQAEMAALFDDLPEALENTVEIARRCAFRVRTRKPILPRFAEDEVEEL
RRQAAEGLARRLEVIPHAAPVEEYEKRLEYELGIIEGMGFPGYFLIVADFIKWAKDHDIP
VGPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREEVIHY
VQEKYGREKVAQIITFGALLSKAAVRDVGRVLQMPFMQTDRLSKMIPVEGVKPVSIAKAL
IEEPRLREAAREEEVVARMLDFAEKLEGLLRNASTHAAGVVIGDRPLDELVPLYQDPRSD
MPATQFNMKWVEQAGLVKFDFLGLKTLTVIQNAIDLLSLRGISLDIGTIPLDDKATYDLY
TSAQTVAVFQVESSGMRDALRQLRPTCIEDIIALVALYRPGPMENIPKYCNVKNGKEKLE
SLHPSIDHILAETQGIIVYQEQVMQIAQVMGGYSLGGADLLRRAMGKKIKEAMDAERPKF
QDGAKQNGVDAAKAAEVFDLLEKFANYGFNKSHAAAYAVVSYQTAWLKANHPVEFMAAVM
NCDIHLTDKLNVYAQEIRRLEIPLIPPCVNRSEATFSVKEGAVVYALGGLKNVGVEAMRM
IVEARGTGFTDLFDFARKVDMKRIGKRPLEMLARAGGFDELDPNRRRVLESLEALIGYSA
ATLADRDSAQTSLFGDGGEALPAPRLPNPEDWLPTERLAEEMKAVGFYLSGHPLDDYMGP
LKRKRVLTFAELVQKCAGGATVAKIAGSVTGRQERKSARGNRFAFVQLSDPTGIFEVTVF
SDTLEQAREFLEPGSNVVLTVEAEPQGDQLKLLARAAQPVDMAVADAAASGLRIFLNEPG
AVESIRARLDDAGKGMSRGRGPVHLVLVHPDLPGEVEIALKETYPVTPQIRGAIKSAHGV
MHVEEF
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgccgcgattcatccacctgcgcacccacaccgcctattcgctgctcgagggc
gcgatccaggcgaaggccctccccaagctcgccgccggagacgacatgccggccgtggct
gtcaccgacacgggcaacctcttctgcgcgctggagttttccgagtatgccgcgggggca
gggctgcagcccatcatcggctgccagatgcgcctcgcctatgccgccgccgcgagcccg
accgagaaggcccccgccccgcgcgacatcgtgctgctggcgcaggacgaggcgggctat
ctcaacctcatgaagctcaactcctgcgccttcctcgacagcccggacgccgagccccac
atcaccctgcccgagctcacccgccacgccgaggggctgatctgcctcaccggcggcgcc
gccgggccggtgggccagctgctgcaggacgggcagggcgccaaggcgcgcgccctcacc
gagaagctcgccgggctcttccccggccggctctacatcgaggtgcagcgccacggcacg
gcgccggagcggcgcacgaaggccgaggccgccaccgagcccgggttcgtcgagctcgcc
tacgcgctggagctgccgctggtggccaccaacgacgtgcatttcgccaaccgcgagatg
tacgaggcgcatgacgcgctgctgtgcatcgccgatggcgcctatgtcgaccaggccgcg
ccgcgccgccggctcacgcccgagcattgcttcaagacgcaggccgagatggccgccctc
ttcgacgacctgccggaggcgctggagaacacggtggagatcgcccggcgctgcgccttc
cgggtgcgcacgcgcaagcccatcctgccgcgcttcgccgaggacgaggtggaggagctg
cgccgccaggccgccgagggcctcgcccggcggctggaggtgatcccgcacgccgccccg
gtggaggaatacgagaagcggctggaatacgagctcggcatcatcgagggcatgggcttt
cccggctacttcctcatcgtcgccgatttcatcaaatgggcgaaggaccatgacatcccg
gtggggccgggccgcggctccggcgcgggcagcctcgtggcctacgcgctcaccatcacc
gacctcgaccccctgcgctactcgctgctgttcgagcgcttcctgaaccccgagcgcgtg
tcgatgcccgacttcgacatcgacttctgcatggaccgccgcgaggaggtgatccactac
gtgcaggagaaatacggccgcgagaaggtggcgcagatcatcaccttcggcgcgctgctc
tccaaggccgcggtgcgcgacgtgggccgcgtgctgcagatgcccttcatgcagaccgac
cgtctgtcgaagatgatcccggtggagggggtgaagccggtctccatcgccaaggcgctg
atcgaggagccgcgcctgcgcgaggccgcgcgggaggaggaggtcgtcgcccgcatgctc
gacttcgccgagaagctcgaggggctgttgcgcaacgcctccacccatgccgcgggcgtg
gtgatcggcgaccgcccgctcgacgagctggtgccgctctaccaggacccgcgctcggac
atgccggccacccagttcaacatgaaatgggtggagcaggccgggctggtgaagttcgac
ttcctggggctgaagacgctgacggtgatccagaacgccatcgacctgctttccctgcgc
ggcatcagcctcgacatcggcaccatcccgctcgacgacaaggcaacctacgacctctac
acctcggcccagaccgtggcggtgttccaggtggaaagttcgggcatgcgcgacgccctg
cgccagctccgccccacctgcatcgaggacatcatcgcgctggtggcgctctaccgcccc
ggcccgatggagaacatcccgaaatactgcaacgtgaagaacgggaaggagaagctcgaa
agcctccacccctcgatcgaccatatcctggccgagacgcagggcatcatcgtctatcag
gaacaggtgatgcagatcgcccaggtgatgggcggctactccctcggcggcgccgacctt
ttgcgccgggccatgggcaagaagatcaaggaggcgatggacgccgagcgcccgaagttc
caggacggcgcgaagcagaacggcgtggacgcggccaaggccgccgaggtgttcgacctg
ctggagaagttcgccaactacggcttcaacaagtcccacgccgccgcctatgcggtggtg
agctaccagaccgcctggctgaaggccaaccatccggtggagttcatggccgcggtgatg
aactgcgacatccacctcaccgacaagctcaatgtctacgcgcaggagatccgccggctg
gagatcccgctgatcccgccttgcgtgaaccgctccgaggccactttctcggtgaaggag
ggcgcggtggtctatgcgctcggcgggctgaagaacgtgggcgtggaagcgatgcggatg
atcgtggaggcgcgcggcaccggcttcaccgacctgttcgacttcgcccgcaaggtggac
atgaagcgcatcggcaagcgcccgctggagatgctggcccgcgcggggggcttcgacgag
ctggacccgaaccgccgccgggtgctggagagcctcgaagcgctgatcggctattccgca
gccaccctggcggaccgggattcggcgcagacctcgctcttcggtgacgggggcgaggcg
ctgcccgccccgcgcctgcccaacccggaggactggctgcccaccgagcggctggccgag
gagatgaaggccgtgggcttctacctctcgggccatccgctggacgattacatgggcccg
ctgaagcgcaagcgcgtgctcaccttcgccgaactggtgcagaaatgcgccggcggggcc
acggtggccaagatcgccggctcggtgacggggaggcaggagcgcaagtccgcccgcggc
aaccgcttcgccttcgtgcagctttccgaccccacggggatcttcgaggtcaccgtcttc
tccgacacgctggagcaggcgcgcgagttcctcgagcccggctccaacgtggtgctgacg
gtggaggccgagccgcagggcgaccagctcaagctgctcgcccgcgccgcccagccggtg
gacatggccgtggccgatgccgcagcctcgggcctgcgcatcttcctcaacgagccgggc
gcggtggagagcattcgcgcgcggctggacgatgccggcaagggcatgtcgcgcgggcgc
gggccggtgcatctcgtgctcgtgcacccggacctgcccggcgaggtggagatcgccctg
aaggagacctatccggtcacgccccagatccgcggcgcgatcaagtccgcgcatggcgtg
atgcatgtcgaggaattctga
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