Paroceanicella profunda: FDP22_20195
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Entry
FDP22_20195 CDS
T06319
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppru
Paroceanicella profunda
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppru03032
]
FDP22_20195 (topA)
03400 DNA repair and recombination proteins [BR:
ppru03400
]
FDP22_20195 (topA)
Enzymes [BR:
ppru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FDP22_20195 (topA)
DNA replication proteins [BR:
ppru03032
]
Prokaryotic type
DNA Topoisomerases
FDP22_20195 (topA)
DNA repair and recombination proteins [BR:
ppru03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FDP22_20195 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
Toprim_2
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QDL94176
UniProt:
A0A5B8FZ33
LinkDB
All DBs
Position
pD4M1A:475057..477756
Genome browser
AA seq
899 aa
AA seq
DB search
MAVVVVESPAKAKTINKYLGSDYTVLASFGHVRDLVEKDGSVDPDNNFEMKWEIAPASQK
HVRAIAEALAKDDKLILATDPDREGEAISWHLMEALTKRRALKKTTEVERVVFNAITKSA
VTEAMKKPRAVDMELVEAYLARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVSLRLIVE
REMEIEAFRAREYWSVTAVLETPRGQEFRARLTALSGKKLDKFDIASEAAAALAVQAVSS
RDLSVASVEAKPASRNPSAPFMTSTLQQEASRKFGMGAQAAMRTAQKLYEAGHITYMRTD
GIDMAPEAVMAARDVIAARYGKEYVPSSPRMYKNKAKNAQEAHECIRPTDMSRAPDKLSL
EPDQRKLYDLIWKRALASQMEAARFERTVVEIASKDGEVGLRANGQVVTFDGFLKVYEEG
RDEAPSRDDEEGDGARLPVIHQGEKTAKRDVSPEQHFTQPPPRYTEATLVKRMEELGIGR
PSTYASIVTTIQDRGYVLKDKNRLIPQDKGRLVTAFLENYFGKYVGYDFTAALEEDLDEV
SAGNKDWHDVLARFWKDFHAAVGETSELRITEVLEKINEVLAPHLFPPREDGKDPRLCPN
CGEGRLSMRTARSGGAFIGCSNYPECRYTRPMSGETEGGELAGPDGKLLGHDDNGLPVTL
RSGRFGPYVQLGEQVEGSEEKPKRASIPKGMALEDVDLKRALDLLSLPRLIGMHPEDGEP
VEASIGRFGPYVRHGKTYANIRDAEEVLTIGMNRAMEVLAQKAARGPGRGASAQPLRELG
DHPDGGALQVMPGRYGPYVKWEKVNATLPKDVTPEELTLEAAVELVNAKAAITGKGRKKA
AAPKKAAAKKPAAAKKPAAAKKTTAAGKTTTAKKTTTAKKATAKSAAAGKPAEEADAED
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcgtcgtcgtcgaatccccggccaaggcaaagactatcaacaagtatctgggc
agcgactacacggttctcgcctccttcggccatgttcgcgacctggttgagaaggacggt
tccgtcgacccggacaacaatttcgagatgaagtgggagatcgctcccgcgtcccagaag
catgtccgcgccattgccgaggcgctggccaaggacgacaagctcattctcgcgaccgac
cctgaccgtgagggcgaggccatctcctggcacctgatggaggcgctcaccaagcgccgg
gcgctgaagaagaccaccgaggtggagcgcgtcgtcttcaacgccatcaccaagagcgcc
gtgaccgaggcgatgaagaagccccgcgccgtggacatggagctggtggaggcctatctc
gcccgccgcgcgctggattatctggtgggcttcaccctgtcgcccgtgctgtggcgcaag
ctgccgggggcgaaatccgccgggcgggtgcagtcggtctcgctgcggctgatcgtcgag
cgcgagatggagatcgaggcgttccgggcccgggagtactggagcgtgaccgccgtgctg
gagacgccgcgcgggcaggagttccgcgcccggctcaccgcgctgtcgggaaagaagctc
gacaagttcgacatcgcctccgaggccgcggcggcgctcgccgtgcaggccgtttcctcg
cgcgatctctcggtcgcctcggtggaggcgaagcccgccagccgcaacccctccgccccc
ttcatgacctccaccctgcagcaggaggccagccgcaagttcggcatgggcgcccaggcc
gccatgcgcaccgcccagaagctctacgaggccgggcacatcacctacatgcggaccgac
ggcatcgacatggcgcccgaggcggtgatggccgcgcgcgacgtgatcgccgcccgctac
ggcaaggaatatgtcccctccagcccgcgcatgtacaagaacaaggcgaagaacgcccag
gaggcgcatgagtgcatccgccccaccgacatgtcccgcgcgccggacaagctgtcgctg
gagcccgaccagcgcaagctctacgacctgatctggaagcgcgcgctggcgagccagatg
gaggccgcccgcttcgagcgcaccgtggtcgagatcgcctcgaaggatggcgaggtgggc
ctgcgcgccaatggccaggtcgtcaccttcgacgggttcctgaaggtctatgaggagggc
cgcgacgaggccccctcgcgcgatgacgaggagggcgacggcgcccgcctgccggtgatc
caccagggcgagaagaccgcgaaacgggacgtctcgcccgagcagcacttcacccagccg
ccgccgcgctacaccgaggcgacgctggtcaagcgcatggaggagctcggcatcggccgc
ccctccacctatgcctcgatcgtcaccaccatccaggatcgcggctacgttctgaaggac
aagaaccggctgatcccgcaggacaagggccggctggtcaccgccttcctggagaactac
ttcggcaagtacgtgggctatgatttcaccgcggcgctggaggaggacctcgacgaggtc
tccgccggcaacaaggactggcatgacgtgctggcccgcttctggaaggacttccacgcc
gccgtgggcgaaacctccgagctgcgcatcaccgaggtgctggaaaagatcaacgaggtg
ctggccccgcatctcttcccgccccgggaggacggcaaggacccgcgcctctgccccaat
tgcggcgagggccggctgtcgatgcgcaccgcgcgctccggcggcgccttcatcggctgt
tcgaactaccccgagtgccgctacacccggccgatgtccggcgaaaccgagggcggcgag
ctggccggcccggacggcaagctgctgggccatgacgacaacggcctgccggtgaccctg
cgcagcgggcgcttcggcccctacgtgcagctcggcgagcaggtcgagggctccgaggaa
aagccgaaacgcgcctccatccccaagggcatggccctggaggacgtggacctgaagcgc
gcgctcgacctcctgtcgctgccccggctgatcggcatgcacccggaggacggcgagccg
gtggaagcctccatcgggcgcttcggcccctacgtgcgccatggcaagacctatgcgaac
atccgcgacgcggaggaagtgctcaccatcggcatgaaccgcgcgatggaagtgctggcc
cagaaggcggcccggggccccggccgcggcgcctcggcgcagccgctgcgcgaattgggc
gaccacccggacggcggcgccctgcaggtgatgccgggccgctacgggccctacgtgaaa
tgggagaaggtgaacgccaccctgcccaaggacgtgacgcccgaggagctcaccctcgag
gccgccgtcgagctggtgaacgcgaaggccgcgatcaccggcaagggccgcaagaaggcc
gccgccccgaagaaggccgccgcgaagaaacccgctgctgcgaagaagcccgccgcggcg
aagaagaccacggcggccggaaagaccacgactgcgaagaagaccaccacggcaaagaag
gccactgcgaaatccgcggccgccggcaagccggccgaagaggctgacgccgaggactga
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