Paroceanicella profunda: FDP22_21465
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Entry
FDP22_21465 CDS
T06319
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ppru
Paroceanicella profunda
Pathway
ppru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FDP22_21465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppru03019
]
FDP22_21465
03009 Ribosome biogenesis [BR:
ppru03009
]
FDP22_21465
Enzymes [BR:
ppru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FDP22_21465
Messenger RNA biogenesis [BR:
ppru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FDP22_21465
Ribosome biogenesis [BR:
ppru03009
]
Prokaryotic type
rRNA helicases
FDP22_21465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
ThylakoidFormat
CMS1
Motif
Other DBs
NCBI-ProteinID:
QDL94441
UniProt:
A0A5B8FJ29
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All DBs
Position
pD4M1B:complement(173897..175654)
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AA seq
585 aa
AA seq
DB search
MTEFEGIVPALAAALQKRGYERLTPVQTAVIAPELGTADALVSAQTGSGKTVAFGLALAP
QLLGGEARFPRAGAPRAMVIAPTRELALQVCRELEWLYGETGAVLATCVGGMDMRTERRT
LERGAHIVVGTPGRLRDHIARGALNLSEIEAVVLDEADEMLDLGFREDLEAILQASPDER
RTMMFSATVSRPIAALAKRYQRDAQRITTTAEASQHVDIEYRVLMAAASDKENAILNLLR
FYDAENAIVFCNTRAGVTHMTARLGNRGFPVVALSGELSQAERSHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNREGLLHRSGRTGRAGRKGVSALIVAPSGRKRAERLL
ASARIDAEWAAPPSAAAILAKDDQRLLGDAALEAAPTGEEAALVAELLARHGAEKVAAAF
IRRARSGQSAPEELLDVASASVGAKRKPEAFGESAWFSLSVGRNQNAEPRWLLPMLCEAG
GLSRREVGAIRMQAEETHVQIAAGHAEAFLAALGPQRALEKGITVTPIQGEPTDMGPAPA
GPRGEKSFRGKPRTGAPMRKGPGGARAGAARSGPPARHRKGNRAD
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgacagagttcgaaggcatcgtgccggcgctggccgcggcattgcagaaacgcggttac
gagcggctcaccccggtccagacggcagtcatcgcgcccgagctgggcacggcggacgca
ctggtctccgcccagaccggctccggcaagacggtggccttcggcctcgccctcgcgccg
cagcttctgggcggcgaggcccgcttcccccgcgccggcgctccccgcgccatggtcatc
gcaccgacccgcgagctggccctccaggtgtgccgggagctggaatggctctacggcgag
accggcgccgtgcttgccacctgcgtcggcggcatggacatgcgcaccgagcggcgcacg
ctggagcgcggcgcgcatatcgtcgtcggcacccccggccgcctgcgcgaccacatcgcc
cgcggcgccctcaacctctcggagatcgaggccgtggtgctggacgaggccgacgagatg
ctcgacctgggcttccgcgaggacctcgaggccatcctgcaggcctccccggacgagcgc
cgcacgatgatgttctccgccacggtctcccgcccgatcgcggccctggccaagcgctac
cagcgcgatgcgcagcgcatcaccaccaccgccgaggcgagccagcacgtcgacatcgag
taccgcgtgctcatggccgccgcgagcgacaaggaaaacgcgatcctcaacctgctgcgc
ttctacgacgccgagaacgccatcgtgttctgcaacacccgcgccggtgtcacccacatg
accgcacggctgggcaaccggggcttccccgtggtcgccctctccggcgagctgagccag
gcggagcgcagccacgccctgcaggcgatgcgcgacgggcgcgcccgggtctgcgtggcc
acggatgtcgcggcgcgcggcatcgaccttcccggcctggaactggtgatccacgccgac
cttcccaccaaccgcgagggcctgctgcaccgctccggccgcaccggccgcgccgggcgc
aagggcgtgagcgcgctgatcgtcgccccctcgggccgcaagcgggccgagcgcctgctg
gcctcggcgcggatcgacgcggaatgggccgcgccgccctccgccgccgcgatcctcgcg
aaggacgaccagcgcctgctgggcgatgccgcgctcgaagccgcccccaccggcgaggag
gccgcgctggtcgccgagctgctggcccggcacggcgccgagaaggtggccgccgccttc
atccgccgcgcccgctccggccagtccgcgccggaggaactgctcgacgtcgcgtccgcc
tccgtgggcgcgaagcgcaagccggaagccttcggcgaaagcgcctggttctcgctctcc
gtggggcgcaaccagaatgcggagccgcgctggctgctgccgatgctctgcgaggccggc
ggactgtcgcgccgcgaagtgggcgcgatccgcatgcaggccgaggagacccacgtgcag
atcgcggccgggcatgccgaggccttcctcgccgctctcggcccgcagcgcgcgctggaa
aagggcatcacggtgaccccgatccagggcgagccgaccgacatgggcccggccccggcc
ggcccgcgcggcgagaaatccttccgcggcaagccccgcaccggcgcgccgatgcgcaag
ggccccggcggcgcacgcgcgggcgcggcccgctccggcccgccggcccgccaccgcaag
ggcaaccgggcggactga
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