Pan paniscus (bonobo): 100976685
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Entry
100976685 CDS
T02283
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pps
Pan paniscus (bonobo)
Brite
KEGG Orthology (KO) [BR:
pps00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pps03036
]
100976685 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pps03400
]
100976685 (SMCHD1)
Chromosome and associated proteins [BR:
pps03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
100976685 (SMCHD1)
DNA repair and recombination proteins [BR:
pps03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
100976685 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
100976685
NCBI-ProteinID:
XP_003817935
Ensembl:
ENSPPAG00000037346
UniProt:
A0A2R9BHL6
LinkDB
All DBs
Position
17:complement(35641467..35790813)
Genome browser
AA seq
2005 aa
AA seq
DB search
MAAADGGGPGGASVGTKEDGGGVGHRMVYLFDRREKESELGDRPLQVGERSDYAGFRASV
CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH
YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV
AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK
QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN
DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN
EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD
GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL
IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT
LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA
AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE
VKTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME
NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP
FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK
NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI
TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD
VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE
INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT
VRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG
LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI
DWPELKESIPVINGRNLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTD
EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDAS
FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND
KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILHSEQVIVEVLPNQPVKLVPKIKPPTP
AVSNVRSVASRTLVRDLHLSITDEYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT
LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ
QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEGRLKEAQLRNELKIHNIDIP
TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV
ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHFRNGKLY
FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL
TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD
SVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETT
DCPVPPKRMRREATRQNRIITKTDV
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggacggcggcgggcctggtggggcctctgtggggactaaggaggatggc
ggaggcgtcggccacaggatggtgtacttgtttgatcggcgcgaaaaggagtccgagctc
ggggaccggcctctgcaggtcggggagcgctcggactacgcgggatttcgcgcctctgtg
tgtcagacacttggcatttcacctgaagaaaaatttgttattacaacaacaagtaggaaa
gaaattacctgtgataattttgatgaaactgttaaagatggagtcaccttatacctgcta
cagtcggtcaatcagttgctactgacagctacgaaagaacgaattgacttcttacctcac
tatgacacactggttaaaagtggcatgtatgaatattatgccagtgaaggacaaaatcct
ttgccatttgctcttgcggaattaattgacaattcattgtctgctacttctcgtaacatt
ggggttagaagaatacagatcaaattgctttttgatgaaacacaaggaaaacctgctgtt
gcagtgatagataatggaagaggaatgacctctaaacagcttaacaactgggccgtgtat
aggttgtcaaaattcacaaggcaaggtgactttgaaagtgatcattcagggtatgttcgt
ccagtaccagtgccacgcagtttaaatagtgatatttcctattttggtgttgggggcaag
caagctgtcttctttgttggacaatcagccagaatgataagcaaacctgcagattcccaa
gatgttcacgagcttgtgctttctaaagaagattttgagaagaaggagaaaaataaagag
gcaatatatagtggatatattagaaacagaaagccctctgattctgttcacattacaaat
gatgatgaaagatttctacatcatcttatcatagaggagaaggaaaaagatagctttact
gctgtggttatcacaggggtacaaccagaacacatacagtacttgaaaaattatttccac
ctttggacacgacagttagcgcatatttatcactactatattcatggcccaaaaggaaat
gaaatacgaacatcaaaagaagttgaacctttcaacaatattgatattgaaatttctatg
tttgaaaaggggaaggtacctaagattgtcaacctaagggaaatacaagacgacatgcag
acgttgtatgtaaacacagcagctgatagttttgaattcaaagctcatgttgaaggagat
ggtgtagtggaagggattatccgttatcatccattcttatatgatagagaaacttaccct
gatgatccatgctttccatcaaaattaaaagatgaagatgatgaagatgattgtttcata
cttgagaaagcagctagagggaaaaggcctatttttgaatgtttctggaatggacgttta
ataccatatacatcagttgaagactttgactggtgtactcctcctaagaagagagggctt
gcaccaattgaatgctacaataggatatctggtgcattattcactaatgacaaattccag
gtcagcacaaataaattgacgtttatggatcttgagctaaaattgaaagataagaacacc
ctttttacaaggattttaaatggacaggaacagcgaatgaaaattgacagagaatttgct
ttgtggctgaaggactgtcatgaaaagtatgataaacaaataaaatttacactttttaag
ggagtaattacacgtcctgatcttccttctaaaaagcaaggtccctgggcaacatatgca
gcaatagaatgggatggaaagatatacaaagcaggacagctggtcaagacaatcaagaca
cttcccctcttttatggaagcatagtaagattttttctttatggcgatcatgatggagaa
gtatatgctacaggaggagaggttcaaattgcaatggaacctcaggcactatatgatgaa
gtaaaaactgtgccaattgcaaagctggataggacagttgctgagaaagctgttaaaaaa
tatgtagaagatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaagga
gatgaattattgcctaatgagattaggcctgctggaacccctattggtgcgttaagaatt
gaaatactgaataaaaaaggggaagcaatgcaaaagcttccaggaacaagccatggaggg
tcaaagaaactcctggttgagctcaaagttattttacattcttcaagtggaaataaagag
attatttcgcatattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaa
aatattcagaagttggggaattataccttgaaattacaagttgtgttgaatgaaagtaat
gcagacacttatgcaggaagaccactaccatctaaagcaattaagttttctgttaaagag
ggtaagccagagaaattttcatttggtcttctggatcttccttttcgtgttggagttcca
tttaatatccctctggagtttcaggatgaatttggtcataccagtcaactagtaactgat
attcagccagttcttgaagcaagtggtttatctttacattatgaagaaataaccaaagga
ccaaattgtgtaattcgaggtgttacagccaagggccctgtaaactcttgtcaaggcaag
aattataatctgaaggttactctgcctggcttaaaagaagactcacagattttgaaaatt
agattactacctggtcaccctcgtcgactgaaagtgaaacctgattctgaaattttagtt
atagaaaatggaacagctttcccatttcaggtggaagttttagatgaatcagacaacata
acagcacaaccaaaattgattgttcattgtaagttttcaggtgctccaaaccttccagtc
tatgttgtagattgcagtagttctggaaccagtattttaacaggatctgcaattcaagtt
cagaatattaaaaaagaccagacgcttaaagcaagaattgaaatacctagttgtaaagat
gtggcacctgtggagaagactattaagttgcttcccagtagccatgttgcaagactacaa
atattcagtgtagaaggacaaaaggcaattcagatcaaacatcaggatgaggttaattgg
atagcgggtgatattatgcataatcttatttttcaaatgtatgatgaaggagaaagagaa
atcaatataacatcagctttagcagaaaaaattaaagttaattggactcctgagattaac
aaagaacacttgctacagggtctgcttcctgatgtgcaagtaccaacatctgtaaaagat
atgcgctattgccaggtttcattccaagatgatcatgtgtctttggaaagtgcgtttaca
gtaagaccacttcctgatgaacctaaacatttaaaatgtgaaatgaaaggaggaaaaaca
gtacagatgggccaagagcttcaaggagaagtagttataataattacggatcagtacgga
aatcagattcaagcattttcaccaagttctttatcttctttgtcaattgctggggttgga
cttgatagctcaaatttgaaaacaacctttcaggaaaacacacagagtataagtgtaaga
ggcatcaaatttattccaggtcctcctggaaataaggatctttgttttacttggcgcgag
ttttctgactttattcgagtgcaactaatttctggacctcctgctaaacttctccttata
gactggccagaactaaaggagtccattccagtgattaatggaagaaatttacagaaccct
attattgttcaactttgtgatcagtgggataatccagcaccggtacaacacgttaaaata
agtcttacaaaagctagcaatttaaagctcatgccttcaaaccaacagcataaaacagat
gagaaaggcagggctaatttgggagtattcagtgtttttgcccctaggggagagcatact
cttcaggttaaagccatctataacaaaagtatcatagaaggacctataattaagttaatg
attcttccagacccagaaaaacccgttcgtctcaatgttaaatatgacaaagatgcgtcc
ttcttagcagggggtcttttcactgattttatgattagtgttatttctgaagatgacagt
atcattaaaaacattaatccagcacgtatttccatgaaaatgtggaagctgtctaccagt
gggaaccgacccccagcaaatgcagaaacatttagttgtaataaaataaaagataatgac
aaggaagatggctgcttctatttcagggataaagtaattcctaataaagtggggacatat
tgtatccagtttggttttatgatggataaaacaaatattctccacagtgaacaggttata
gttgaagtcctgcctaatcaacctgtgaagttagtacctaaaattaaaccacctacacca
gctgtttcaaatgttcgctcagttgccagtaggaccttggtcagagatctacatcttagt
atcacggatgagtacgacaaccatactggaattgatttggttggcactataatagccacc
attaaaggctctaatgaggaagatactgataccccactttttattgggaaagttagaaca
cttgaattccccttcgtgaatggttcggctgaaatcatgagtctggtgctggcagaaagt
agtcctggaagggatagtactgaatattttattgtatttgagccccggctaccactttta
tcaagaaccttagaaccatatatcctaccgttcatgttttacaatgatgttaagaagcag
caacaaatggcagcacttacaaaagaaaaggaccaattatctcagtctattgttatgtat
aaaagtttatttgaagccagccaacagcttcttaatgaaatgaaatgtcaagttgaagaa
ggaagattaaaagaggcccaattgcgaaatgaactaaaaatacataatattgacattcct
acaacacaacaggtgccacacattgaagcacttctgaaaagaaagctatcagaacaagaa
gaactgaagaaaaaacctagaagatcgtgtactcttccaaactatactaaaggcagtgga
gatgttttgggaaagattgcacatctagcacaaattgaagatgatagagctgcgatggtt
atttcttggcatctggcaagtgacatggactgtgtagtcaccctaaccactgacgctgca
cgtcgtatctatgatgaaacccaaggtcgtcagcaggtgttgccccttgattctatttac
aagaagactcttccagactggaaaagacctctacctcatttccgaaatggaaaattgtat
tttaaacccattggagatccagtctttgctcgagacttgttaacatttccagataatgta
gaacattgtgaaacagtatttggtatgctgttaggagacaccattattttggataatctg
gatgcggccaatcattatagaaaagaggttgttaaaattacacactgtcctacactgctg
accagagacggagatcgaattcgaagtaatggaaagtttgggggccttcagaataaagct
cctccaatggataaacttcggggaatggtatttggagctccagttccaaaacagtgtctg
atcttaggggaacaaatagatcttcttcagcagtatcgttctgctgtgtgcaaactagac
agtgtgaataaggatcttaacagtcaattagagtaccttcgcactccggatatgaggaag
aaaaagcaagaacttgatgaacatgagaaaaatctcaaactaatagaggaaaaactaggt
atgactcccatacgtaagtgtaatgactcattgcgtcattcaccaaaggttgagacgaca
gattgtccagttcctcctaaaagaatgagacgagaagctacaagacaaaataggattata
accaaaacagatgtatga
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integrated database retrieval system
