Podospora pseudoanserina: QC764_0042450
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Entry
QC764_0042450 CDS
T09816
Symbol
CAF16
Name
(RefSeq) CCR4-NOT regulatory complex component
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QC764_0042450 (CAF16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_0042450 (CAF16)
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
QC764_0042450 (CAF16)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_29
AAA_28
AAA_16
AAA
Arf
AAA_22
DUF3584
AAA_23
AAA_25
AAA_15
PduV-EutP
ORC-CDC6-like
SRP54
AAA_14
RsgA_GTPase
AAA_33
AAA_13
Motif
Other DBs
NCBI-GeneID:
87960846
NCBI-ProteinID:
XP_062803655
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Position
2:<4004462..>4005334
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AA seq
290 aa
AA seq
DB search
MAPASGPPSVVTNNLSYLFQDHSTGLSGITLSLPPRSRTLLIGANGAGKTTLLRLLAGKR
LAPAGTITIGGNDPFKVGLEGVTYLGLEWVLNAIVRTDIGVDELLRSVGGDQYPDRRDEL
VAVLDIDTRWRMHAVSDGERRRVQLAMGLVRPWTILLLDEITVDLDVWSRSQFLSFLKKE
TEERECTVVYATHILDNLAGWPTHLVHMHLGTVVEWGTTEKMLESKLGGEKETGNSRLGE
LVLRWLKEDLDRRGPRDKLRRGPEGLSYNSGNLGIGGYGLESKSKLEEKR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcccccgcttccggccccccctctgtagtaacaaacaacctctcctacctcttccaa
gaccactccaccggcctctcaggcataaccctctccctcccccccagatcccgcaccctc
ttgatcggcgccaacggcgcaggcaagaccaccctcctccgcctcctggcgggaaaacgc
ctagcgccagcaggcacaatcaccatcggcggcaacgaccccttcaaagtcggcctcgag
ggcgtgacctacctcggcctggaatgggtcctcaacgccatcgtccgcaccgacatcggc
gtcgacgagctcctccgctccgtcggcggggaccaataccccgaccgtcgtgacgagctc
gtcgccgttctcgacatcgataccaggtggaggatgcacgccgtttccgacggcgagcgc
cgcagggtccagctcgccatgggcctagtccggccgtggacgatcctgttattggatgaa
atcaccgtcgacctggatgtctggtcccggagtcagtttttgagctttttgaaaaaggag
acggaggagagggagtgcacggttgtgtatgcgacgcacatattggataatttggcgggg
tggccgacgcatttggtgcatatgcatcttgggacggtggtggagtgggggacgacggag
aagatgttggagagtaaactggggggggaaaaagagacgggaaacagtcggctaggggag
ttggtgttaaggtggttgaaggaggacttggatagaagggggccgagagacaagttgagg
agggggccggaggggttgagttataattcggggaatttggggattggggggtatgggtta
gagagtaagagcaagttggaggagaagagatga
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