Paenibacillus psychroresistens: EHS13_00935
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Entry
EHS13_00935 CDS
T06328
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppsc
Paenibacillus psychroresistens
Pathway
ppsc03030
DNA replication
ppsc03410
Base excision repair
ppsc03420
Nucleotide excision repair
ppsc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHS13_00935 (ligA)
03410 Base excision repair
EHS13_00935 (ligA)
03420 Nucleotide excision repair
EHS13_00935 (ligA)
03430 Mismatch repair
EHS13_00935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsc03032
]
EHS13_00935 (ligA)
03400 DNA repair and recombination proteins [BR:
ppsc03400
]
EHS13_00935 (ligA)
Enzymes [BR:
ppsc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EHS13_00935 (ligA)
DNA replication proteins [BR:
ppsc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EHS13_00935 (ligA)
DNA repair and recombination proteins [BR:
ppsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EHS13_00935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EHS13_00935 (ligA)
MMR (mismatch excision repair)
DNA ligase
EHS13_00935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHS13_00935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DNA_ligase_ZBD
BRCT_2
DUF6572
DUF669
Motif
Other DBs
NCBI-ProteinID:
QGQ93584
UniProt:
A0A6B8RCQ6
LinkDB
All DBs
Position
202017..204053
Genome browser
AA seq
678 aa
AA seq
DB search
MGEIQASEQQLEQMKQLIAEINHHNKLYYTLDQPELTDKQYDLLYDSLTNLEKETGITLP
FSPSLRIGDALLNGFESYKHRAKLWSLDKAQNITDLQTWHTRAIKLWEQYNAAHPDDLLP
PLSFAVELKFDGLSLNLTYEHGDLVQAATRGNGVIGESILAQVKTIRSIPLQIPYTDGVI
EVQGEGMMFLSVMEQYNKTAVEPLKNARNAAAGALRNLNPLNTAERKLNAFMYNVGYSDH
LQFNNHQEMAAFLRENGFKINPYLQYFETMEEVADELERMAEKRLTLDYLIDGGVVKITD
MRTREVFGYTDKFPRWAVAFKFEAEEAETTLLSVTWEVGRTGKLTPNATVEAVDFGGVTV
QRCTLNNRGDIERKNLQHALGSLVIIRRSNDVIPEILGKANDEQDGEEIIYPVNCPACAT
LLEERGAHIFCPNRLDCPPQLIGRITHFASRDAMDIDTFSIATAEQLYHEREVKDPADLY
ELTYEQLVGLERFGEKKAKKLLGAFEKSKKPDLSAFLYALGISNTGKTTTKVLADHFGNL
QAILAASAEELITLPDVGGIVAESIVAFFADPRMRLSIERMLASGVEPSTSVRAVVTDEG
SIFYGKTVVLTGSLPNLSRDEAGKMLEAVGAKISGSVSKKTDFVVAGESAGSKLTKAQEL
GIRIIDSEEELLQLLNGN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaatacaagcgtccgagcagcagctagagcagatgaaacagctcattgctgaa
attaatcatcataacaagctgtactatacgttggatcagccagaactaacagataagcag
tatgatcttttatatgattcgttgactaacttagaaaaagaaacagggattactctgccc
ttttctccttcactgagaattggagacgcactgttaaatggatttgaatcttataaacac
cgcgctaagctttggagcttggataaagcccagaatataaccgatctccagacctggcat
acacgtgctataaagctttgggagcagtataatgcggcccatccagatgatttactgcct
ccgctatcatttgcagttgagctgaaatttgatggactgtctctgaatttgacctatgag
catggagatttagtgcaagcggctacccgtggcaatggagttattggagaaagtatcctt
gctcaagtgaagaccattcgttccattccactgcaaattccttatacagatggggttatt
gaagtgcagggcgaaggaatgatgttcttatctgtgatggagcaatataacaaaaccgcg
gtagaaccattgaagaatgcacgtaatgctgccgctggcgcactgcgtaatttgaacccg
ctaaacacggccgagcgcaagctgaatgcttttatgtataacgtcggctatagcgaccac
ttacaatttaacaaccatcaggagatggctgctttcttacgtgagaatggctttaaaata
aatccctacctccaatatttcgaaacaatggaagaagtagcggatgagctggagcgaatg
gcagaaaaaagactaacccttgattatttaatcgatggtggtgtcgtgaaaattacggat
atgcggacccgtgaggtttttggctatacggataaattcccacgttgggcggttgctttt
aaatttgaagccgaagaagcggaaacgaccttgctttctgtcacatgggaagtgggccga
accggcaagctaacccctaacgcaactgtggaagccgttgactttggtggtgtaaccgta
cagaggtgtacgttgaataatcgcggtgatatagaacgcaagaatttacagcatgccttg
ggcagtctggtgattattcgccgttccaatgatgtcattccagagattttaggcaaggct
aatgatgagcaggatggagaagaaataatctatcccgtaaactgtccggcttgcgctact
ttgctggaagaacgcggagctcatatcttttgtcccaaccgtttagactgccctccccaa
ttaattggccggatcacgcattttgcttcacgggatgctatggatatagataccttcagc
attgctacagcagagcagctttaccatgagcgtgaggtcaaagatcccgcagatttatat
gagcttacttatgagcaattggttgggttggaacgtttcggtgaaaagaaagccaagaag
ctgctgggggcatttgagaaaagtaaaaagccggatctatccgcatttctatatgcatta
ggtatttcaaacacagggaaaaccaccactaaagtattagccgatcattttggaaattta
caagctattttagctgcaagtgcggaagagctgattaccttacccgatgttggcgggatt
gttgccgagagcattgttgccttttttgctgatcctcgtatgcgtctcagtattgagcgt
atgctggccagcggagtggaaccatcgacgtctgtgcgtgctgttgttacggacgaggga
agtattttttatggtaagacagtagttcttacaggatcattgccaaacttaagtcgcgat
gaagcgggtaaaatgctagaagcggtcggagcgaagatatcaggcagtgtttctaagaag
actgactttgtcgttgcaggtgaaagcgcgggaagtaaattgacgaaagcacaagagctg
ggcattcgtattattgatagcgaggaagaattactgcagcttttgaatggaaattga
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