Podospora pseudocomata: QC762_706470
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Entry
QC762_706470 CDS
T09797
Symbol
LIG4
Name
(RefSeq) DNA ligase (ATP)
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ppsd
Podospora pseudocomata
Pathway
ppsd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ppsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QC762_706470 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppsd03400
]
QC762_706470 (LIG4)
Enzymes [BR:
ppsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QC762_706470 (LIG4)
DNA repair and recombination proteins [BR:
ppsd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
QC762_706470 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
RNA_ligase
BRCT
DNA_ligase_IV
LIG3_BRCT
PTHB1_CtH
Motif
Other DBs
NCBI-GeneID:
87913398
NCBI-ProteinID:
XP_062739305
LinkDB
All DBs
Position
7:1683818..1687382
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AA seq
1063 aa
AA seq
DB search
MASQRRRDHRQGPDAEAVEEDEAQYGRGGMSMEEVDQHFPHRPKNAHKTLPFAELYKSLF
NPLMDCKPGSSATAGAAAAAVPGKTRFGKAKKKTGGVNYHEQRRHIIERFMSRWRKEVGD
DFYPAMRLILPDKDRDRGVYGLKESGIGKMLVRVMKIGRDSEDGYSLLHWKLPGGGGGGN
QKFGGKGQTGTAGDFAGRVLEVVGKRAMRGTPGGWTIGEVNVLLDRLAGASGEGEQLPIF
EEIYRNCCAEEVMWLVRIILKDMRVGATERTFLGLWHPDAEALFSVSSSLRRVCWELWDP
ETRLEQKETGVSLMQCFQPQLAQFQMTTGFGKLVQNLGVTEEEKEFWIEEKLDGERMQMH
MKEDETVPGGFRFAFWSRKAKDYTYLYGEGLEDDNSALTRHLKNAFHDGVRELVLDGEMI
TWDPDIDKIVPFGTLKTAALDQQKNPFQNGPRPLYRVFDILLLNKKALADYTLRDRHAAL
EAAVRGEHRRLEIHPYESATTPDAIEPFLRRVVAEASEGLILKNPRSRYQLNSRNNDWIK
VKPEYMSEYGESLDCVIIGGYFGSGRRGGILSSFLCGVRVSENHVRSGAALTREKCLSFC
KVGGGLKAEDYAEIRHHTEGKWQDWQASNPPTDYIELAGGKMQYEKPDVWIRPSESVVIS
IKAASIAPSDQFAMGWTLRFPRFRKLRLDKSWDEGMDASDFVLLKDKVKEEEKERKAMEM
ESRKRKPAKRLKKELVIAGTDPNAAPVEFAEGGDNIKAEPMSQVAFPPPQARRKSDNQLF
QGLDFCVLSEAVKPRKMSKPDLEKLIKEHGGRIHQQVDKGGNMILLAEKNVVRVASLKRA
GDADIVKPKWVFDCLAQNNGEGYLLPFEEGHLFHATEEMVKLAAENTDQYGDSYVRDVTP
DELRDIIDDMRTKGGVKEEEDAFHDERTGEFDAEHFLDQLEERGRGLEGLKSFLFRRCRV
YFPVATKEEEEEEKRGPSSTELKAVKLQNEVKFGNGTVVGGLDDKEITHVVVVGDGEKER
KELAASVRYEVSSRRHVPRIVTGRWVEDCVKEGTLVDEEGYAP
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcagagaagacgagatcaccggcagggtcccgacgcggaggctgtcgaggag
gacgaggcgcagtatgggaggggtgggatgagcatggaggaagttgatcagcatttcccc
caccgcccgaaaaacgcgcacaagacgctgccgtttgcggagctgtacaagtcgttgttt
aacccgcttatggactgcaagcccgggtcgtctgctactgctggtgcagcagctgctgct
gtcccggggaaaacaagatttggaaaggcgaagaagaagacgggcggggtgaactaccac
gaacagagaaggcacatcatcgagcggttcatgagccggtggaggaaggaggtgggtgat
gacttctaccctgccatgaggttgatcctgcctgacaaggatcgggacaggggggtgtac
gggttgaaggagagcgggattgggaagatgctggtgagggtgatgaagattgggagggat
agcgaggatggatattctttgcttcattggaagcttcctgggggtggtgggggggggaat
cagaagtttggggggaaggggcagacaggaacggcgggggattttgcgggacgggtgctg
gaggttgttgggaagagggctatgagggggacgccgggggggtggacgattggggaggtt
aatgttttgttggatcggttggctggggctagtggggagggggagcagctgccgattttt
gaggagatttacaggaattgctgtgcggaggaggtgatgtggctggtgaggattatactg
aaggatatgagggtgggcgcgacggagaggacgtttttggggctgtggcatccggatgcg
gaggcgttgtttagcgtttcgagtagtttgaggagggtttgctgggagttgtgggatccg
gagacgaggttggagcagaaggaaaccggggtgagcttgatgcagtgttttcagccgcaa
ctggcgcagtttcagatgacgacggggtttgggaagctggtgcagaatctgggggttacc
gaggaggagaaggagttttggattgaggagaagctggatggggagaggatgcagatgcat
atgaaggaggatgagacggtgcccggggggtttaggtttgcgttttggtccaggaaggca
aaggattacacgtatttgtatggggaggggttggaggatgataactcggcgttgacgagg
catttgaagaatgcgtttcatgacggggtgagggagttggttttggatggagagatgatt
acgtgggatccggatatcgacaagattgtgccgtttggcacgctcaagacggcggcgctg
gatcagcagaagaatccgtttcagaacgggcctcgacctctgtatcgggtctttgatatt
cttcttctgaacaagaaggctctggcggactacaccctccgggaccgccacgctgcccta
gaggcagccgtcaggggcgagcatcgccgtctcgagattcacccctacgaatcagccaca
acaccagacgccatcgagcccttcctccgcagagtcgtcgccgaagcctcggaaggtctc
atcctcaagaacccgcgctctcgctaccagctcaacagccgcaacaacgactggatcaag
gtcaaacccgagtacatgtccgagtatggcgagtccctcgactgcgtcatcatcggcggc
tacttcggctccggccgtcgcggaggcatcctctccagcttcctctgcggcgttcgcgtc
agcgagaaccacgtcaggtccggcgctgccctcaccagagagaagtgtttgagcttttgc
aaagtaggcggtggcctcaaagcagaagactacgccgagatcagacaccacaccgagggc
aaatggcaagactggcaagcgagcaacccgcccacggactacatcgagctcgcgggaggg
aaaatgcaatacgaaaaaccagatgtatggatccgacctagtgagtcggttgtcatctcc
atcaaggcagcctccatcgccccctccgaccagttcgccatgggctggactctacgcttc
cctcggttccgtaagctgagactggacaaatcgtgggacgagggcatggacgcgagcgat
tttgttcttctcaaagacaaagtcaaggaagaagagaaggagcgaaaggcgatggagatg
gagagcagaaagcgcaagccagcaaagaggttgaagaaggagttggtcatcgcggggacg
gatccgaatgctgcgccggttgagttcgccgaggggggggataatatcaaggccgaaccg
atgagccaggttgcgtttcccccccctcaggctagaaggaagtctgacaaccaactgttc
cagggactggacttttgtgtattgtccgaggcagtcaaaccccgcaagatgtccaagcct
gatctggaaaagttgatcaaggagcatggagggaggattcatcagcaagtcgacaagggc
gggaacatgatcctcctcgcggagaagaacgtcgtccgggtggcgtcgttgaaacgggcc
ggtgacgcggatattgtcaagcccaaatgggtctttgactgccttgcgcagaataatgga
gagggctatctcctcccgtttgaggaggggcacttgtttcatgccacggaggagatggtg
aagttggcggcggagaatacggatcagtatggggattcgtatgtcagggatgttacccct
gatgagctgagggatatcattgacgacatgcgcaccaaagggggtgttaaagaggaggag
gatgcgtttcatgatgagaggacgggggagtttgatgctgagcactttttggatcagctg
gaggagcgagggaggggtttggaggggttgaagagtttcttgtttagacggtgtagggtt
tacttccctgttgcgacgaaggaggaggaggaggaggagaagagggggccctcgagtacg
gagttgaaggcggtgaagctgcagaatgaggtcaagttcgggaacgggactgtggtgggg
ggtctggatgataaggagatcacgcatgtggtggtggtcggggatggggagaaagagagg
aaggagttggcagcgagcgtgaggtatgaggttagttcgaggaggcatgtgccgaggatt
gtgacggggaggtgggtagaggattgtgtgaaggaggggacgttggttgatgaagaggga
tatgccccttga
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