KEGG   PATHWAY: ppsh02010
Entry
ppsh02010                   Pathway                                
Name
ABC transporters - Pseudomonas psychrophila
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
ppsh02010  ABC transporters
ppsh02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Pseudomonas psychrophila [GN:ppsh]
Gene
G5J76_00465  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
G5J76_00470  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
G5J76_00475  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
G5J76_00480  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
G5J76_00485  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
G5J76_00605  [KO:K01996]
G5J76_00610  [KO:K01995]
G5J76_00615  livM; high-affinity branched-chain amino acid ABC transporter permease LivM [KO:K01998]
G5J76_00620  [KO:K01997]
G5J76_00630  [KO:K01999]
G5J76_00745  [KO:K02012]
G5J76_00750  [KO:K02011]
G5J76_00975  msbA; lipid A export permease/ATP-binding protein MsbA [KO:K11085] [EC:7.5.2.6]
G5J76_01835  [KO:K23058]
G5J76_01840  [KO:K23055]
G5J76_01845  [KO:K23056]
G5J76_01850  [KO:K23057]
G5J76_02055  [KO:K02011]
G5J76_02060  [KO:K02012]
G5J76_02605  [KO:K02036] [EC:7.3.2.1]
G5J76_02610  pstA; phosphate ABC transporter permease PstA [KO:K02038]
G5J76_02615  [KO:K02037]
G5J76_02620  [KO:K02040]
G5J76_03130  ssuB; aliphatic sulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
G5J76_03135  ssuC; aliphatic sulfonate ABC transporter permease SsuC [KO:K15554]
G5J76_03145  [KO:K15553]
G5J76_03165  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
G5J76_03170  tauB; taurine ABC transporter ATP-binding subunit [KO:K10831] [EC:7.6.2.7]
G5J76_03175  tauC; taurine ABC transporter permease TauC [KO:K15552]
G5J76_03210  [KO:K11073]
G5J76_03215  [KO:K11073]
G5J76_03220  potA; polyamine ABC transporter ATP-binding protein [KO:K11076] [EC:7.6.2.16]
G5J76_03225  [KO:K11075]
G5J76_03230  [KO:K11074]
G5J76_03350  [KO:K02424]
G5J76_03380  [KO:K02066]
G5J76_03385  [KO:K02065]
G5J76_03390  [KO:K02067]
G5J76_03425  [KO:K02073]
G5J76_03465  [KO:K02045] [EC:7.3.2.3]
G5J76_03470  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
G5J76_03475  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
G5J76_03480  [KO:K23163]
G5J76_03705  [KO:K12368]
G5J76_03935  [KO:K02073]
G5J76_03940  [KO:K02072]
G5J76_03945  [KO:K02071]
G5J76_03960  znuB; zinc ABC transporter permease subunit ZnuB [KO:K09816]
G5J76_03965  znuC; zinc ABC transporter ATP-binding protein ZnuC [KO:K09817] [EC:7.2.2.20]
G5J76_03975  [KO:K09815]
G5J76_04070  [KO:K02072]
G5J76_04075  [KO:K02071]
G5J76_04080  [KO:K02073]
G5J76_04180  [KO:K02010] [EC:7.2.2.7]
G5J76_04185  [KO:K02011]
G5J76_04190  [KO:K02012]
G5J76_04325  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
G5J76_04330  ftsX; cell division protein FtsX [KO:K09811]
G5J76_04720  choV; choline ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
G5J76_04725  choW; choline ABC transporter permease subunit [KO:K02001]
G5J76_04730  [KO:K02002]
G5J76_04765  choX; choline ABC transporter substrate-binding protein [KO:K02002]
G5J76_05740  [KO:K06858]
G5J76_06185  [KO:K12536]
G5J76_06685  [KO:K05847] [EC:7.6.2.9]
G5J76_06690  [KO:K05846]
G5J76_06695  [KO:K05845]
G5J76_06700  [KO:K05846]
G5J76_06730  [KO:K12372]
G5J76_06735  [KO:K12371]
G5J76_06740  [KO:K12370]
G5J76_06745  [KO:K12369]
G5J76_06750  [KO:K12368]
G5J76_06760  [KO:K12368]
G5J76_06765  [KO:K12368]
G5J76_07775  [KO:K10004] [EC:7.4.2.1]
G5J76_07780  [KO:K10002]
G5J76_07785  [KO:K10003]
G5J76_07790  [KO:K10001]
G5J76_07820  [KO:K02010] [EC:7.2.2.7]
G5J76_08060  [KO:K01996]
G5J76_08065  [KO:K01995]
G5J76_08070  [KO:K01998]
G5J76_08075  livH; high-affinity branched-chain amino acid ABC transporter permease LivH [KO:K01997]
G5J76_08080  [KO:K01999]
G5J76_09470  [KO:K02002]
G5J76_09475  [KO:K02001]
G5J76_09480  [KO:K02000] [EC:7.6.2.9]
G5J76_10020  [KO:K10537]
G5J76_10025  [KO:K10539] [EC:7.5.2.12]
G5J76_10030  [KO:K10538]
G5J76_10500  [KO:K09808]
G5J76_10505  lolD; lipoprotein-releasing ABC transporter ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
G5J76_10510  [KO:K09808]
G5J76_10630  [KO:K01999]
G5J76_10635  [KO:K01999]
G5J76_10640  [KO:K01997]
G5J76_10645  [KO:K01998]
G5J76_10650  [KO:K01995]
G5J76_10655  [KO:K01996]
G5J76_10890  [KO:K10017] [EC:7.4.2.1]
G5J76_10895  [KO:K10015]
G5J76_10900  [KO:K10016]
G5J76_10905  [KO:K10013]
G5J76_11085  [KO:K02002]
G5J76_11945  [KO:K09816]
G5J76_11950  [KO:K09817] [EC:7.2.2.20]
G5J76_11955  [KO:K09815]
G5J76_12770  [KO:K10013]
G5J76_13425  [KO:K01996]
G5J76_13430  [KO:K01995]
G5J76_13435  [KO:K01998]
G5J76_13440  [KO:K01997]
G5J76_13445  [KO:K01999]
G5J76_14160  [KO:K23064]
G5J76_14165  [KO:K23063]
G5J76_14170  [KO:K23062]
G5J76_14180  [KO:K23061]
G5J76_14520  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K10111] [EC:7.5.2.-]
G5J76_14525  [KO:K10229]
G5J76_14530  [KO:K10228]
G5J76_14535  [KO:K10227]
G5J76_14880  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
G5J76_14885  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
G5J76_14890  [KO:K02044]
G5J76_15105  [KO:K11069]
G5J76_15110  [KO:K11070]
G5J76_15115  [KO:K11071]
G5J76_15120  [KO:K11072] [EC:7.6.2.11]
G5J76_15370  [KO:K10439]
G5J76_15375  [KO:K10441] [EC:7.5.2.7]
G5J76_15380  [KO:K10440]
G5J76_15385  [KO:K10440]
G5J76_15515  [KO:K11073]
G5J76_15655  modA; molybdate ABC transporter substrate-binding protein [KO:K02020]
G5J76_15660  modB; molybdate ABC transporter permease subunit [KO:K02018]
G5J76_15665  modC; molybdenum ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
G5J76_15765  [KO:K02002]
G5J76_15770  [KO:K02000 K02001] [EC:7.6.2.9]
G5J76_15895  [KO:K11073]
G5J76_16330  [KO:K14699] [EC:7.-.-.-]
G5J76_16335  [KO:K14698] [EC:7.-.-.-]
G5J76_16975  [KO:K15554]
G5J76_16980  [KO:K15555] [EC:7.6.2.14]
G5J76_16985  [KO:K15553]
G5J76_17080  nikA; nickel ABC transporter, nickel/metallophore periplasmic binding protein [KO:K15584]
G5J76_17085  nikB; nickel ABC transporter permease subunit NikB [KO:K15585]
G5J76_17090  nikC; nickel ABC transporter permease subunit NikC [KO:K15586]
G5J76_17095  [KO:K15587] [EC:7.2.2.11]
G5J76_17100  [KO:K10824] [EC:7.2.2.11]
G5J76_17105  [KO:K11073]
G5J76_17130  [KO:K11073]
G5J76_17340  [KO:K13893]
G5J76_17345  yejB; microcin C ABC transporter permease YejB [KO:K13894]
G5J76_17350  [KO:K13895]
G5J76_17800  [KO:K09972] [EC:7.4.2.1]
G5J76_17805  [KO:K09971]
G5J76_17810  [KO:K09970]
G5J76_17815  [KO:K09969]
G5J76_18010  [KO:K11073]
G5J76_18145  rbsD; D-ribose pyranase [KO:K06726] [EC:5.4.99.62]
G5J76_18160  [KO:K10440]
G5J76_18165  [KO:K10441] [EC:7.5.2.7]
G5J76_18170  [KO:K10439]
G5J76_18665  [KO:K02048]
G5J76_18715  ccmD; heme exporter protein CcmD [KO:K02196]
G5J76_18720  [KO:K02195]
G5J76_18725  ccmB; heme exporter protein CcmB [KO:K02194]
G5J76_18730  ccmA; cytochrome c biogenesis heme-transporting ATPase CcmA [KO:K02193] [EC:7.6.2.5]
G5J76_19290  [KO:K18893]
G5J76_19650  macB; MacB family efflux pump subunit [KO:K05685] [EC:7.6.2.-]
G5J76_19720  [KO:K02040]
G5J76_19915  [KO:K13893]
G5J76_19920  [KO:K13893]
G5J76_19925  [KO:K13894]
G5J76_19930  [KO:K13895]
G5J76_19935  [KO:K13896]
G5J76_20180  [KO:K15553]
G5J76_20930  [KO:K10025] [EC:7.4.2.1]
G5J76_20940  [KO:K10023]
G5J76_20945  [KO:K10024]
G5J76_20950  [KO:K10022]
G5J76_21180  [KO:K10112] [EC:7.5.2.-]
G5J76_21185  [KO:K17317]
G5J76_21190  [KO:K17316]
G5J76_21195  [KO:K17315]
G5J76_22075  lptG; LPS export ABC transporter permease LptG [KO:K11720]
G5J76_22080  lptF; LPS export ABC transporter permease LptF [KO:K07091]
G5J76_22155  [KO:K09972] [EC:7.4.2.1]
G5J76_22160  [KO:K09971]
G5J76_22165  [KO:K09970]
G5J76_22170  [KO:K09969]
G5J76_22605  [KO:K07122]
G5J76_22610  [KO:K07323]
G5J76_22615  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
G5J76_22620  mlaE; lipid asymmetry maintenance ABC transporter permease subunit MlaE [KO:K02066]
G5J76_22625  [KO:K02065]
G5J76_22650  lptB; LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
G5J76_23610  [KO:K11074]
G5J76_23615  [KO:K11075]
G5J76_23620  potA; polyamine ABC transporter ATP-binding protein [KO:K11076] [EC:7.6.2.16]
G5J76_23720  [KO:K15555] [EC:7.6.2.14]
G5J76_23725  [KO:K15554]
G5J76_23730  [KO:K15554]
G5J76_23735  [KO:K15553]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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