Pseudomonas psychrophila: G5J76_11730
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Entry
G5J76_11730 CDS
T06988
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppsh
Pseudomonas psychrophila
Pathway
ppsh03030
DNA replication
ppsh03410
Base excision repair
ppsh03420
Nucleotide excision repair
ppsh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G5J76_11730 (ligA)
03410 Base excision repair
G5J76_11730 (ligA)
03420 Nucleotide excision repair
G5J76_11730 (ligA)
03430 Mismatch repair
G5J76_11730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppsh03032
]
G5J76_11730 (ligA)
03400 DNA repair and recombination proteins [BR:
ppsh03400
]
G5J76_11730 (ligA)
Enzymes [BR:
ppsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G5J76_11730 (ligA)
DNA replication proteins [BR:
ppsh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G5J76_11730 (ligA)
DNA repair and recombination proteins [BR:
ppsh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G5J76_11730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G5J76_11730 (ligA)
MMR (mismatch excision repair)
DNA ligase
G5J76_11730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G5J76_11730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Bep_C_terminal
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QIE32887
LinkDB
All DBs
Position
2582825..2585188
Genome browser
AA seq
787 aa
AA seq
DB search
MTAANTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAQHPELVTADSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFDETDMREFDRRVSEGLDLPAGDLFGGGAEVEYSC
EPKLDGLAVSLLYQDGNLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGSGWPAVLEVRG
EVFMSKAGFERLNETQLAVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGLGQVSE
EFSDTHIGNLKQLQQWGMPISHELKLARGIAECLDYYRDIGERRAALPYEIDGVVFKVNN
LASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
SNATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVLERRPEDARAVQIPESCPVCGS
HVERTQLIKRSKGRETITEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVSSPADLYTLAFEQIVDLEGFAELSSKNLLQAIADSKRPTLARFIYALGIPDVG
EETAKVLARSLASLDRVQRALPQVLTYLPDVGLEVAHEIHSFFSDAHNQQVIAQLLERGL
ELQDQGDLGAEFAASATLGGLIDKLHIPSVGPGGAQKLAEKFGSLEGVIHADWLDMRQAL
PEKQAKAVREFFDNPENARLALEVEAQLRDFGMHWQSEKKIVEGLPLAGQTWVLTGSLEL
MSRDVAKDKLESLGAKVSGSVSGKTHYVVAGPGAGSKLVKANELGLKVLDEEAFVAFLKE
QGLATKP
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaatacccgcattttagagctgcgcgctgaactggatcagcacaactat
cgctaccacgtgctggacgaaccgagcattccggacgccgagtacgatcgcctgtttcat
gagttgaaagcgctggaagcccaacacccggagctggtgactgccgactcgccgacccag
cgcgtggggagtgcggccttgtcggcctttactcaggtgcgtcacgaagtgcccatgctg
agtttgggtaatgccttcgatgaaaccgatatgcgtgagtttgatcgccgtgtcagcgaa
ggtctggacctgcctgcaggggatctgtttggcggtggcgccgaagttgagtacagctgt
gagccaaagctggacgggttggcggtcagtttgctgtatcaggatggcaatctggtgcgt
ggcgctacgcgaggtgatggcaccacgggtgaagacatcagcgtcaacgtgcgcaccgtg
cgcaatatacccctcaagctgcatggcagcggctggcctgcggtgctggaagtacgtggc
gaggtgttcatgtccaaggcaggctttgagcgcctcaatgagactcagctcgctgttggc
ggcaagacctttgccaaccctcgtaacgcggcggcgggcagcttgcgccagctggactct
aagatcaccgccagtcggccgctggagttttgctgttatgggctgggacaagtctccgag
gaattctctgatacccatataggcaatctcaagcagttgcagcaatggggtatgcccatc
agccacgagttgaaactggcccgcgggattgccgagtgcctggattactaccgtgatatt
ggcgagcgccgtgctgcgctgccctatgagatcgacggtgtggtgttcaaggttaacaac
ctggcatcgcagcgtgagctgggctttcgggctcgcgagccacgttgggcgattgcccac
aagttcccggcgatggaagagctgacggagttgctggatgtggagtttcaggtcgggcgc
acgggtgcggtaacgcccgtggctcgcctcaagccggtcaaggtggccggcgtgactgtc
tccaatgcgaccctgcacaacatggatgaagtagcacgtcttgggctgatgattggcgat
acggtgattattcgccgtgcaggcgacgtgattccgcaggtggtgcaggtagtgctcgag
cgtcgtcctgaagatgcccgtgcggtgcagatccctgaaagctgcccggtatgtggctcc
catgttgagcgcacgcaactgatcaaacgcagcaaggggcgtgaaaccatcaccgagggt
gcggtttatcgctgcgtcggacgtctggcctgcggtgcccagctcaaacaggcgattatt
cattttgtctcgcgtcgtgcgatggacattgaaggcctgggcgaaaaaagcgtcgagcag
ttggtggacgaggggctggtgagttcgcccgccgacctttataccctggctttcgaacag
attgtcgacctcgaaggctttgccgagttgtcgagcaagaacctgctccaggccattgcc
gacagcaagcgtccgacattggcgcgttttatctatgcgctgggtattcctgatgtcggt
gaggagacggccaaggtcctggcccgctccctggcctctctggatcgcgtacagcgtgcc
ttgcctcaagtactgacctacttgcctgatgtcggactcgaagtggcgcacgaaatccac
agcttcttcagcgatgcgcataaccagcaggtgattgctcaattgctggagcgtggcctg
gaattgcaggatcagggcgatttgggggctgaattcgcggccagtgcgacgctgggcggt
ctgatcgacaagctgcacattccctcggtaggaccgggtggcgcacagaagctggccgag
aagtttggctcgctcgaaggcgtgatccatgcggactggctcgatatgcgtcaggccttg
cccgaaaagcaggccaaggcggtacgtgaatttttcgataatcccgaaaatgcccgtctg
gcgctggaagtagaagcgcaactgcgggatttcggcatgcactggcagagtgagaagaag
atcgttgagggcttgccactggcgggtcagacatgggtgctgaccggttcgctggagttg
atgagccgagatgttgccaaggacaagctggagagtcttggggccaaggtctcaggttcg
gtttctggcaagacccattacgtggtcgcagggccaggggctggctctaagctggtcaag
gccaatgagctggggctcaaggtgctggatgaagaagcttttgtggcctttttgaaagag
caggggctcgcgactaagccctag
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