Parasedimentitalea psychrophila: QPJ95_19190
Help
Entry
QPJ95_19190 CDS
T09434
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ppso
Parasedimentitalea psychrophila
Pathway
ppso03030
DNA replication
ppso03410
Base excision repair
ppso03420
Nucleotide excision repair
ppso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QPJ95_19190 (ligA)
03410 Base excision repair
QPJ95_19190 (ligA)
03420 Nucleotide excision repair
QPJ95_19190 (ligA)
03430 Mismatch repair
QPJ95_19190 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppso03032
]
QPJ95_19190 (ligA)
03400 DNA repair and recombination proteins [BR:
ppso03400
]
QPJ95_19190 (ligA)
Enzymes [BR:
ppso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QPJ95_19190 (ligA)
DNA replication proteins [BR:
ppso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QPJ95_19190 (ligA)
DNA repair and recombination proteins [BR:
ppso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QPJ95_19190 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QPJ95_19190 (ligA)
MMR (mismatch excision repair)
DNA ligase
QPJ95_19190 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QPJ95_19190 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WIY24621
UniProt:
A0A9Y2KZ07
LinkDB
All DBs
Position
3956483..3958741
Genome browser
AA seq
752 aa
AA seq
DB search
MSQTNKTKTTSLSESDARIELLHLQEKLRLADLDYHQKDSPTLSDADYDSVKRRYLDLLK
WFPQLSQIATQVDQVGAPVASGFGKISHVLPMLSLGNAFDDEDVEAFDASVRKYLSLAAE
QQLSYSAEPKIDGLSLSLRYENGKLLQAATRGDGSTGENVTANALTISDIPQQIANAPDV
LEVRGEVYMSHQDFAALNIRQQERGGKAFANPRNAAAGSLRQLDAEITRSRPLRFFAYSW
GELSAPLAKTQMDAIKRLTDFGFKTNALTKLCLSPVGMIEHYHKIEAQRASLGYDIDGVV
YKVNDLGLQGRLGFRSTTPRWAIAHKFPAELAWTRIAAIDIQVGRTGALSPVARLVPVTV
GGVVVSNATLHNEDYIAGRDSKGEDIRGGKDIRVGDFVQVYRAGDVIPKVADVDLGKRPD
DSKAYTFPALCPDCHSPAVREEGDAARYCTGGLICPAQAKEKLRHFVARKAFDIDGLGAR
QIESFYENDDLQIQEPADIFTLARRDAAKFTKLKNRSGWGDQSAAKLFAAIEDKRRIAFG
RMLFSLGIRHVGETAAKDLALHFMSWVKLVEGVDTARSAALAWRMADEAEDAERIAAKSS
NRRAKIKETRDSVIAACEIQPGSAAAWQGLTGIDGIGASVALSLTDAFANVAERAAIMRL
AAELEIVPPEAPPNESPVAGKTVVFTGTLEKMSRAEAKSRAEALGAKVSGSVSKKTDILV
AGPGAGSKAKKASDLGVKILDEDSWLALIDQA
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaccaacaagacaaaaaccacatctctttctgaaagcgatgcccgcattgaa
ttgctgcatctgcaagagaaactacggctggctgaccttgattatcaccaaaaagattct
ccgacattgtcggatgcggactatgattcggtaaagcggcgttacctcgacctgctgaaa
tggtttccacagctttcccagattgccacccaagtcgatcaggtcggcgcaccggtcgcc
tctggattcggaaaaatctctcatgtgctgccaatgctgtctttgggcaatgcatttgac
gatgaggatgttgaggcttttgacgctagtgttcgcaaatacctcagcctggcagcggag
caacagctgtcctatagcgcagagccaaaaatcgacgggttgtcgctgtctctgcgatat
gaaaacgggaaactgctgcaggcggcgacgcggggtgatggctctaccggtgaaaatgtc
acggcaaatgccctgactatttcagatatcccgcaacagattgccaatgcgccagacgtg
ctggaggtgcgtggcgaggtctatatgagccaccaggactttgcggcattgaatatccgc
cagcaagaacgcggcggcaaagcctttgccaatccccgcaatgcggcggcgggatcctta
cgccaattggacgccgaaattacccgctccagacctttgcggttctttgcctacagctgg
ggcgaactctctgcgccccttgcaaaaactcaaatggacgccatcaagcgactgactgat
tttgggtttaaaaccaacgctttaactaagttgtgtctgtccccagttgggatgatcgaa
cattatcataaaatcgaagcacagcgggcatccttaggatacgatatcgacggtgtggtg
tataaagtgaatgaccttggcctgcaggggcggcttggttttcggtcgacaacgccccgc
tgggcgatcgcccataaatttccggccgaactggcctggacccggatcgcggccatcgac
attcaagtgggtcgcactggcgccctcagtccggttgcccgattggtgccggtgacagtt
ggcggcgtggtggtttccaatgccacgttgcacaatgaagattacatcgccgggcgtgat
tccaaaggcgaagacatccgcggcggcaaggacatccgagttggggattttgtgcaggtg
tatcgcgccggcgacgtgatccccaaggtggccgatgtagacctgggtaaacggcccgac
gattcaaaggcttatacctttcctgccctttgccctgattgccatagtccggctgtacgc
gaagagggagacgccgcgcgttattgcacgggcggactgatttgccccgctcaagccaag
gaaaagctgagacattttgtggcgcgcaaggcctttgatattgatgggctcggcgcaagg
cagatagagtccttctatgagaacgatgatctgcaaattcaggagccggccgatatcttc
acattggcaaggcgggatgcggccaaatttaccaaactgaaaaatcgaagtggctggggc
gaccaaagtgctgcgaagctgtttgcggccattgaagacaagcgccggatagcctttggc
cggatgttgttttcattgggtattcgccatgtgggcgaaaccgcagccaaggatttggca
ctgcatttcatgagctgggttaaattggtagagggtgttgataccgcgcgttcagcagcc
ctggcatggcgaatggcggatgaggccgaagacgcagaacgtattgcagctaaatcctca
aaccgacgtgcaaaaatcaaggaaacacgggattcggtgatcgcggcttgtgaaattcag
cctgggtctgcagccgcgtggcagggtcttacaggcattgatggcatcggcgcctctgtc
gccctttcattgacagacgcctttgcaaacgttgcagaacgcgctgcaatcatgaggttg
gccgccgaacttgagattgttccaccggaagccccccccaatgaaagcccggtcgccggg
aaaactgtggtgttcaccggcacattggaaaaaatgagccgcgccgaggccaaatcacgg
gctgaggctcttggggccaaggtgtccggatccgtttccaagaagaccgacatattggtg
gccggcccaggggcggggtccaaagctaagaaagcctccgaccttggcgtcaaaatcctt
gatgaggacagttggcttgctctgatagaccaggcatga
DBGET
integrated database retrieval system
