Podospora pseudopauciseta: QC763_108980
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Entry
QC763_108980 CDS
T09815
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ppsp
Podospora pseudopauciseta
Pathway
ppsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC763_108980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppsp03041
]
QC763_108980
Spliceosome [BR:
ppsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
QC763_108980
Complex C
U5 SnRNP specific factors
QC763_108980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_IV
EFG_C
GTP_EFTU_D2
EFG_III
MMR_HSR1
EFL1
Motif
Other DBs
NCBI-GeneID:
87927829
NCBI-ProteinID:
XP_062770439
LinkDB
All DBs
Position
1:complement(3270174..3274353)
Genome browser
AA seq
1047 aa
AA seq
DB search
MPALPSHSSVPKQLPAGTWPAQLARALPTINFWRLGAARRLATTRRASIQPIQPQLPDTL
SKMDDDLYDEFGNFIGEAEASEEESEHGVDAGNYAYDDYPEEAPEATGQELMEIDDDGPS
NAVILHEDKQYYPTAAQVYGEGVETMVQEEDAQPLTQPIIAPVEQKKFSIEEADLPPVFF
DRSFMTDLMNYPEQIRNVALAGHLHHGKTAFMDMLVLETHNINDRLEQRTGKKRDEQLRY
TDVHVLERERGLSIKASPMSLVLPNTKGKSHLVNIIDTPGHVDFVDEVAAAFRLVDGVCL
VVDVVEGVQVNTEQIIKHAVLEDIPITLIVNKMDRLVLELKLPPNDAYYKLKHVIEEVNT
VIENTIPGKGESKRVSPERGNVLFACTSMGWCFTLKSFAKMYSDSFGGVNIEEFAKRLWG
DVYFNPRKRSFTRKPVDEGAKRSFVNFILEPIYKIYSHTISESPEDLKGTLAKLGIQLKP
SQYKTDPKVLLKLVCEQFFGPSTGFVDMVCEHIPSPAEAAQKKLERYYTGPLDTKVAESM
KACDQNGPLVIYVTKLFNTADTKSFNAFGRVMSGIAQPGTEVRVLGEGYSIDDEEDMVVA
RVAEVFIAETRYNIPTDGVPAGNWVLLGGVDNSIVKTGTIVAKQFEDDEDAYIFKPLTHL
TESVLKVAVEPINPSELPKMLDGIRKINKSYPLVTTKVEESGEHIILGTGELYMDCVLHD
LRRLYADMEVRVSDPVVRFCETVQDMSATKCYAITPNKKNTITMVAEPLDDGIAKDIESG
AVRIRDPPRKTAKFFVDKYDWDLLAARSIWAFGPEEMGPNILQDDTLPGEVDKKRLATVK
ESIRQGFAWATREGPLCEEPIRNTKFRLIDVALAQETIFRGGGQIIPTARRACYSSFLMA
SPRLMEPLYSVSMTGPQDSVSMVYNILARRRGHVLSDGPIAGTPLYRVNGLIPVIDSFGF
ETDLRINTPGQAMVSLVFDRWNMVPGDPLDKEQVTRPLQMASAQATARDFVLKTRRRKGL
SEDVSVAKFLEREFYESLVGSGTLGEA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgccagcactgccctcgcacagtagcgtcccaaaacagttgcctgccgggacttggcct
gcgcagttggctcgtgcgctgccaaccattaatttttggagacttggtgctgcgagaagg
ctcgcgacgacgcgacgagcctcaatccagccaattcaaccccaactccccgataccctc
agcaaaatggatgacgatctttatgacgagtttggaaacttcatcggcgaggccgaggct
tccgaagaagaatccgaacatggcgtggatgcgggcaactacgcttacgatgactatcct
gaggaggcaccagaggccactggccaggaattgatggaaattgacgatgatggtccatcc
aacgccgtgatcctccatgaagacaagcagtactatccgacggcagcccaggtgtatggc
gagggggttgagacgatggttcaggaggaggatgcgcaaccactaacacagcccatcatc
gcccccgtcgagcagaagaagttcagcatcgaggaggccgaccttccaccagtgttcttc
gaccgcagtttcatgaccgatctcatgaactatcccgaacagattcgaaatgtcgccctg
gccgggcacctgcaccacggaaagacggcgtttatggatatgctggtattggagacgcac
aacatcaacgacaggctagaacagaggacagggaagaagcgggacgaacaactcagatat
accgacgtacatgtgctagagcgggaaagaggattgtcaatcaaggcgtcgcccatgagc
ttggttctccccaacaccaagggcaagtcccatctcgtcaacattatcgacacacccggc
catgtggatttcgtcgatgaggttgccgcggcgtttcggctggtggacggtgtttgcttg
gtggtggatgtggtggagggtgttcaggtcaacacagagcagatcatcaaacatgccgtt
ctcgaggatatcccgatcacgttgatcgtcaacaagatggatcgcctggttctcgaactg
aagctgccacccaacgacgcctactacaagctcaagcacgtcatcgaagaggtaaacact
gttatcgagaacacgatccccggcaagggcgagtcgaagagggtcagtccagagagaggc
aatgtgctgtttgcatgcacttcgatgggctggtgctttaccctgaagtcgttcgccaag
atgtactccgacagcttcggaggcgtcaacatcgaggagtttgctaaacggttatggggt
gatgtctacttcaacccaaggaaacggagcttcacaaggaaacccgtcgatgaaggtgct
aagcggtcctttgtcaacttcattctcgagcctatctacaagatctattctcacactatt
agtgagagcccggaggatctcaagggtactcttgcgaagcttggcatccaactcaagcct
tcccagtacaagacggatcccaaggttctgttgaagctggtttgcgagcagttctttggg
ccatcgaccgggttcgttgatatggtctgcgagcacattccttctccagctgaggcggcc
cagaagaagctcgagcgctactacaccggtcctctcgacacaaaagttgccgagtcgatg
aaggcttgcgatcaaaacggacctctggtcatctatgtcacaaagctgttcaacacggct
gataccaagagcttcaatgcttttgggagagtgatgagcggtattgctcagccagggacc
gaggttcgggtattgggcgagggctactcgatcgacgacgaggaagacatggtcgtggcc
agagtagccgaggtcttcattgccgaaactcgatacaatatcccaaccgatggagtccct
gctgggaactgggtcttgctgggcggcgttgacaattcgatcgtgaagacgggtacgatt
gtagccaagcagttcgaggatgacgaagacgcctacatcttcaagcctctcactcacctg
accgagtctgttctgaaggttgcggtggagcccatcaacccatcggaactgccaaagatg
ctggacggaattcgaaagatcaacaagagctatcctttggtgactacgaaggtggaggag
tctggcgaacacatcattctcggaaccggtgaactctacatggattgtgtgctgcacgac
ttgcgccgtctctacgccgacatggaggtcagagtatcggatcccgtcgtccgattctgc
gagacggtacaggacatgtcagccaccaagtgctatgccatcacaccaaacaagaaaaac
accatcaccatggtggccgagccattagatgatggcatcgcaaaggacatcgagtcaggg
gccgtgaggatacgggacccgcctcgaaagacggccaaattcttcgtcgacaagtatgac
tgggaccttttggcggccagaagcatctgggcctttggaccggaagagatgggtccaaat
attctccaagacgacacattgccaggagaggtcgacaagaaacgattagccacggtgaag
gagtcgattcgtcagggttttgcttgggccacccgagaaggcccactatgcgaagaacca
atccgcaacaccaagttccgcctcatcgacgttgccctggcgcaggaaaccatcttccgt
ggcggcggccagatcatccccacggcccgcagggcgtgctactcgtcctttttgatggcc
tcccccaggctgatggagccgctctactcggtctcgatgactggacctcaggactcggtg
tcgatggtgtacaacattttggccaggaggaggggccatgtcttgtcggatgggcccatc
gcgggcacgccgctttatagggtcaatgggttgataccggtgattgatagttttgggttt
gagacggatctgaggatcaacacgccggggcaggcgatggtgagcttggtgtttgaccgg
tggaatatggtgccgggggatccgctggacaaggagcaggttacgaggccgctgcagatg
gcaagcgcgcaggcgacggcgagggattttgtgctcaagactaggaggaggaaggggttg
agtgaggatgtgagtgtggctaagtttttggagagggagttttatgagagtttggtgggg
agtgggactttgggggaggcttga
DBGET
integrated database retrieval system
